Allostella sp. ATCC 35155: STAQ_41540
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Entry
STAQ_41540 CDS
T07954
Name
(GenBank) hypothetical protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
stel
Allostella sp. ATCC 35155
Pathway
stel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
STAQ_41540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stel03019
]
STAQ_41540
Enzymes [BR:
stel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
STAQ_41540
Messenger RNA biogenesis [BR:
stel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
STAQ_41540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
P-loop_SecA
Utp25_C
AAA_19
Cas3-like_C_2
Fe-ADH
CMS1
DUF8086
Motif
Other DBs
NCBI-ProteinID:
BBK39076
LinkDB
All DBs
Position
4407112..4408431
Genome browser
AA seq
439 aa
AA seq
DB search
MTQFTDLGLAAPLLQALADEGYLTPTPIQAQAIPHLLTGRDLLGIAQTGTGKTAAFALPI
LHRLMADRHALVRKSVRALVLSPTRELASQIAESFRAYGRHLPVRVALAFGGVPLGAQIR
ALAGGVDVLVATPGRLIDHLDTGAVRLDQVEMIVLDEADHMLDMGFIHAVRRIVRALPHK
RQSLFFSATMPKEIGALAADFLRDPVRVEVAPVATTAERVEQRMIFAEQAQKPALLVGLV
KEVNPRLMLVFTRTKHGADRVVRQLEQAGIEAAAIHGNKSQSQRERALAAFRAGKTRILV
ATDIAARGIDVDGVSHVINFDLPNIPESYVHRIGRTARAGADGIAIGFCSSEEKPYLKDI
EKLIGQKVEAMGAPVELPAVRPASAQAPSQRPQGHVKGGYGAGHSAAGQHRRSGPPAGRP
QAARPGRRPQGGQRSAASR
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
ttgacccagttcaccgacctcggcctcgcggcgccgctcctgcaggcgctcgccgacgag
ggttatctgacgcccacgccgatccaggcgcaggccattccccatctgctgaccggccgc
gacctcctcggtatcgcccagaccggcaccggcaagaccgccgccttcgccctccccatc
ctccaccgcctgatggccgaccggcacgcgctggtgcgcaagtccgtccgcgccctggtc
ctgagcccgacccgcgagctggcgagccagatcgccgagagcttccgcgcttatggccgc
cacctgcccgtgcgcgtcgcgctggccttcggcggcgtgccgctcggcgcgcagatccgc
gcgctggcgggcggcgtcgacgtgctcgtcgccactcccgggcgcctcatcgaccatctc
gataccggcgccgtgcggctcgaccaggtcgagatgatcgtgctcgacgaggcggaccac
atgctcgacatgggcttcatccatgccgtgcgccgcatcgtccgcgccctgccgcacaag
cgccagagcctcttcttctcggcgaccatgccgaaggagatcggcgcgctcgccgccgac
ttcctgcgcgatcccgtccgggtcgaggtggcgccggtggcgacgaccgccgagcgcgtc
gagcagcgcatgatcttcgccgagcaggcgcagaagccggcgctgctggttggcctcgtc
aaggaggtgaacccgcgcctgatgctggtcttcacccgcaccaagcacggcgccgaccgc
gtcgtccggcagctcgagcaggccggcatcgaggccgcagccattcacggcaacaagagc
cagagccagcgcgaacgcgccctcgccgcgttccgtgccggcaagacccgcatcctggtc
gcgaccgacatcgccgcccgcgggatcgacgtcgacggggtctcgcacgtcatcaacttc
gatctgccgaacatccccgagagctatgtccaccgcatcggccgcaccgcgcgggccggc
gccgacggcatcgcgatcggcttctgcagctccgaggagaagccgtacctcaaggatatc
gagaagctgatcggccagaaggtcgaggcgatgggtgcgcccgtcgagctgccggccgtg
cgcccggcatcggcccaggctccgagccagcggccgcagggccacgtcaagggcggctat
ggcgccggccattccgcagcaggccagcatcgccgttcgggcccgccggccggtcggccg
caggccgcgcgccccggccgtcgtccccagggcgggcagcggagcgccgccagccgctga
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