Stenotrophomonas sp. MYb57: CLM74_00125
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Entry
CLM74_00125 CDS
T05384
Name
(GenBank) Ku protein
KO
K10979
DNA end-binding protein Ku
Organism
stem
Stenotrophomonas sp. MYb57
Pathway
stem03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
stem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CLM74_00125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stem03400
]
CLM74_00125
DNA repair and recombination proteins [BR:
stem03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CLM74_00125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku
HC2
RRM_PARP14_1
Motif
Other DBs
NCBI-ProteinID:
AVJ35142
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All DBs
Position
25672..26598
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AA seq
308 aa
AA seq
DB search
MARPIWTGTLSFGLLNVPVSLMSGERKVDLHFRMLDSRDRKPIRFERVNADTGEEVPWKD
IVKAYEYDKGSYVVLEEDDIRSAAPESHETVEVETFVDASQIDPRYYEKPYLLVPGKKAE
KGYVLLRETLRSTGKVGIARVVVRTREYLCAVMPNDDALVLMILRYPQELVEPDDYKLPS
GKLADYRITSKETAMAEQLIESMAGDWDPSQYHDEFRERLQQVLNKRIKSKGGTTQVEDE
PAPREDATTNVVDFMALLQKSLDANKRTPAKKAAARKAPAKKAAAKKAPAKKAAKKAARK
TPARRKAG
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atggcccgcccgatctggactggtacgctttccttcggcctgctcaacgtaccggtctcg
ctgatgtccggcgagcgcaaggtcgacctgcacttccgcatgctggattcgcgcgatcgc
aaaccgatccgcttcgaacgggtcaacgccgacaccggcgaggaagtgccgtggaaggac
atcgtcaaagcctacgagtacgacaagggcagctacgtcgtgctggaggaagacgatatc
cgttcggcggcgccggaaagccatgaaacggtggaggtggaaacctttgtcgacgccagc
cagatcgacccgcgatactacgagaagccctatctgctggtgccgggtaaaaaggccgag
aagggctacgtgctgctgcgggaaacgctgcgcagcactggcaaggtcggtatcgcccgg
gtggtggtgcgcacgcgcgagtacctgtgcgcggtgatgcccaacgatgacgcgctggtg
ctgatgatcctgcgctatccgcaggaactggtcgagcctgacgactacaagctgcccagt
ggaaagcttgccgattaccgcatcaccagcaaggaaacggcgatggccgagcagttgatc
gagtcgatggccggtgactgggatccttcgcagtaccacgatgaattccgcgaacgcctg
cagcaggtgctgaacaagcgcatcaagtccaagggcggcaccacccaggtggaggacgag
ccggcaccgcgcgaggacgcaaccaccaacgtggtggacttcatggcgctgctgcagaag
agcctggatgccaacaagcgcacgccggcgaagaaggcggccgcgcgcaaggctccagcc
aagaaggcagcggcgaagaaggcaccggcaaaaaaggccgcaaagaaggccgccaggaag
acccctgcgcgacgcaaggcaggttga
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