Stenotrophomonas sp. MYb57: CLM74_02585
Help
Entry
CLM74_02585 CDS
T05384
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
stem
Stenotrophomonas sp. MYb57
Pathway
stem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLM74_02585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stem03019
]
CLM74_02585
Enzymes [BR:
stem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CLM74_02585
Messenger RNA biogenesis [BR:
stem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CLM74_02585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
P-loop_SecA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AVJ31743
LinkDB
All DBs
Position
complement(565911..567332)
Genome browser
AA seq
473 aa
AA seq
DB search
MSFESLGLAPFLLRALAEQGYETPTPIQQQAIPLVLAGRDLLAGAQTGTGKTAAFGLPLL
QHLGTASQEVRTGPRKPRALILAPTRELATQVHDSLRGYSKYLRIPSACIYGGVGMGNQL
DILRRGVDLLVACPGRLIDHLERRSIDLSGIELLVLDEADRMLDMGFLPSIKRILAKLPK
QNRQTLLFSATFEDNIRQLALEFMRNPEQIQVTPKNTVAETITHKVHPVDGSRKRDLLLH
LLAQDSREQTLVFARTKHGSDKLAAFLEKSGIKTAAIHGNKSQGQRLRALGDFKAGRVTV
LVATDIAARGIDINELPKVINFDLPMVAEDYVHRIGRTGRNGATGEAISLVAQDEVKLLR
AIVRLLGRDMDIRDVPGFELQTPIRWGNSAPGKAEADTGERVPRKTHARRPHGDAPRHAH
AGPKKAGGGRREGAGNGQQRAGAGAGQGQRRGGGANTGGGRGRGQGGGGGRAG
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgaatccctgggccttgcgcccttcctgctgcgtgcgctcgccgagcagggc
tacgaaaccccgaccccgatccagcagcaggcgatcccgctggtgctggccggtcgcgac
ctgctggccggcgcacagaccggcaccggcaagaccgctgcgttcggcctgccgctgctg
cagcacctgggcaccgcttcgcaggaagtgcgcactggcccgcgcaagccgcgcgcgctg
atcctggcaccgacccgcgaactggccacccaggtgcatgacagcctgcgcggttacagc
aagtacctgcgcatccccagcgcctgcatctacggcggtgtcggcatgggcaaccagctg
gacatcctgcgtcgcggcgtggacctgctggtggcgtgcccgggccgcctgatcgaccac
ctggagcgtcgcagcatcgacctgtccggcattgaactgctggtgctggacgaagccgac
cgcatgctggacatgggcttcctgccctcgatcaagcgcatcctggccaagctgcccaag
cagaaccgccagaccctgctgttctcggccaccttcgaggacaacatccgccagttggcg
ctggagttcatgcgcaacccggaacagatccaggtcacgccgaagaacaccgtcgccgag
accatcacccacaaggtgcatccggtcgatggcagccgcaagcgcgacctgctgctgcac
ctgctggcgcaggacagccgcgagcagaccctggtgtttgcccgcaccaagcacggcagc
gacaagctggccgcgttcctggaaaagtccggcatcaagaccgcggcgatccacggcaac
aagagccagggccagcgcctgcgtgcgctcggcgacttcaaggctggccgtgtcaccgtg
ctggtggccaccgatatcgccgcgcgcggtatcgacatcaacgagctgccgaaggtgatc
aacttcgatctgccgatggtggccgaagactacgtgcaccgtattggccgtaccggccgc
aacggtgcgaccggtgaagcgatttcgctggtggcgcaggatgaagtgaagctgctgcgc
gcgatcgtgcgcctgctcggccgcgacatggacatccgcgatgtgccgggcttcgagctg
cagacgccgatccgctggggcaacagtgctccgggcaaggccgaggccgataccggcgag
cgcgtgccgcgcaagacccacgcgcgccgtccgcacggcgatgcgccgcgtcatgcccat
gcaggcccgaagaaggccggcggtggccgccgcgagggcgccggcaacggccagcagcgc
gcaggcgcaggtgccggtcagggccagcgtcgcggtggcggtgccaatactggtggcggt
cgtggccgcggccagggtggcggtggcggtcgcgccggctga
DBGET
integrated database retrieval system
