Stenotrophomonas sp. MYb57: CLM74_05125
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Entry
CLM74_05125 CDS
T05384
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
stem
Stenotrophomonas sp. MYb57
Pathway
stem02020
Two-component system
stem02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
stem00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CLM74_05125
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CLM74_05125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stem03021
]
CLM74_05125
Transcription machinery [BR:
stem03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CLM74_05125
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
HTH_23
HTH_Crp_2
HTH_38
Sigma70_r4
MarR_2
HTH_24
Sigma70_r4_2
MarR
HTH_AsnC-type
HTH_11
Motif
Other DBs
NCBI-ProteinID:
AVJ32201
LinkDB
All DBs
Position
complement(1117314..1118753)
Genome browser
AA seq
479 aa
AA seq
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MKTRLQTSLGQQLVLTPQLQQAIKLLQMSTIELELEIAQAVESNPLLDWSDSSDEGAGVD
KDGSSEDAGGDNDAPPDNAESSGDDWAPAELDWSSGGSGGSFDDDDDNGSAAERVAETET
LADHLLWQLHLTHLSKRDRSIGAALIDSLEDDGYLREPLSAIAEALLPAIHAGEDEILTV
LHQIQRFDPVGVAARSLGECLQLQLDVLPADTPCLALARQVAAGPLEQLPRSGVTGLAQQ
LKQPLAEVETAVALLRSLDPRPGTQIAPLAQDTYVVPDVVVWRQNGIWRAALAAHAGPKL
VIHRGYEQMIRRCGDADAGYLRGQLQEARWLLKGLQARGETLLRVVRSLIQQQAGFLEFG
EQALRPLTLREIAGELGLHESTVSRAIARKHVRTPRGTLPLRAFFASGIDTDGGGEASST
AIQAMIRRLIDDENPRKPLSDAKLADLLKSSGIPVARRTVAKYREAMNISASHERVRIV
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgaagactcggctgcagacatcgttgggacagcagctggtgcttacgccccagctgcag
caggcgatcaagctgctgcagatgtccacgatcgagctggagctggaaatcgcccaggcg
gtggagagcaatccgctgctggactggtcggacagcagcgacgaaggcgccggtgtcgac
aaggacggcagcagcgaggacgcgggcggcgacaatgacgccccgcccgacaacgctgaa
agcagcggcgacgactgggcgcctgccgagctggactggagtagtggcggcagcggcggt
agtttcgatgacgacgacgacaacggcagtgccgccgaacgcgttgccgaaaccgaaacc
ctggccgaccacctgctgtggcagctgcacctgacccacctgtccaagcgcgaccgcagc
atcggcgccgcgctgatcgattcattggaagacgacggctatctgcgcgagccgctctcg
gccatcgccgaagcgctgttgccggcgatccacgccggtgaagacgaaatcctgaccgtg
ctgcaccagatccagcgcttcgaccccgtaggcgtggccgcacgcagccttggcgaatgc
ctgcaactgcagctggacgtgcttcctgctgataccccgtgcctggccctggcccggcag
gttgccgccggcccactggaacaactgccgcgctccggcgtgaccggcctggcccagcag
ctgaaacagccgctggccgaggtcgagaccgccgtggccctgctgcgctcgctggacccg
cgccccggcacccagatcgccccgctcgcccaggacacctacgtggtgcccgacgtcgtc
gtatggcggcagaacggcatctggcgcgccgcgctggccgcccatgccggccccaagctg
gtgatccaccgcggttacgagcagatgatccgccgctgcggtgacgccgatgccggttat
ctgcgcggccagctgcaggaggcgcgctggctgctgaagggcctgcaggcgcgaggcgag
acgctgttgcgggtagtgcgaagcctgatccagcagcaggccggcttccttgaattcggc
gaacaggcattgcgcccgctgaccctgcgcgagatcgccggcgaactgggcctgcacgaa
tccaccgtatcgcgcgcgatcgcccgcaaacatgtgcgtacgccacgcggcaccctgccg
ctgcgcgccttcttcgcttcgggcatcgacaccgacggcggcggcgaagcgtccagcacc
gccatccaggccatgatccggcgcctgatcgatgacgagaacccacgcaagccgctttct
gacgccaagctggctgacctgctcaaatcgtcgggaatcccagtagcgcgccgcaccgtg
gcgaagtatcgtgaggccatgaacatctccgcctcgcacgaaagagtcagaatcgtttga
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