KEGG   Stenotrophomonas sp. MYb57: CLM74_05965
Entry
CLM74_05965       CDS       T05384                                 
Name
(GenBank) excinuclease ABC subunit A
  KO
K03701  excinuclease ABC subunit A
Organism
stem  Stenotrophomonas sp. MYb57
Pathway
stem03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:stem00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    CLM74_05965
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:stem03400]
    CLM74_05965
DNA repair and recombination proteins [BR:stem03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CLM74_05965
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      CLM74_05965
SSDB
Motif
Pfam: UvrA_DNA-bind UvrA_inter ABC_tran SMC_N AAA_29 AAA_16 AAA_23 AAA_25 AAA_21 RsgA_GTPase nSTAND1 nSTAND3 Viral_helicase1 DnaJ_CXXCXGXG
Other DBs
NCBI-ProteinID: AVJ32355
LinkDB
Position
complement(1295564..1298560)
AA seq 998 aa
MAMDFIRIRGARTHNLKNIDLDLPRDKLIVITGLSGSGKSSLAFDTIYAEGQRRYVESLS
AYARQFLSVMEKPDLDHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGTP
RCPDHGYPLEAQTVSQMVDHMLTLDPEQRYMLLAPVIRDRKGEHAQVFDQLRAQGFVRVR
VDGELYEIDAVPPLALRQKHTIEAVIDRFRPREDIKQRLAESFETALKLGDGMASVQSLD
DAAATPTLFSSKYSCPVCDYSLPELEPRLFSFNAPMGACPGCDGLGMAEFFDPSRVVVHP
ELSLAAGAVRGWDRRNAYYFQLIASLAKHYKFDTDAAWNSLPAKVQQAVLYGSGEDAITF
TYFTEAGGRTQRKHRFEGIIPNLERRYKETESAAVQEELGKYISEHACPECNGARLNKAA
RNVFVADRPLPELVVLPIDEALKFFSELSLPGWRGEIAAKIVKEIGERLGFLVDVGLDYL
TLERKADTLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLTRLRDLG
NTVIVVEHDEDAIRLADYVLDIGPGAGVHGGEIVGQGSLQDLLDAPRSLTGQYLSGKRAI
KIPARRHKPNPKMTLHLRGATGNNLKGVDLAIPAGLLTCVTGVSGSGKSTLINDTLFSLA
ANEINGASHPIAPYKEIDGLDLFDKVVDIDQSPIGRTPRSNPATYTGLFTPLRELFAQVP
ESRARGYSPGRFSFNVRGGRCEACQGDGLIKVEMHFLPDVYVPCDVCHGKRYNRETLEIL
YKGFNINDVLEMTVEDALKLFEPVPSIARKLETLVDVGLSYIKLGQSATTLSGGEAQRVK
LSKELSRRDTGRTLYILDEPTTGLHFHDIEALLGVLHKLRDEGNTVVVIEHNLDVIKTAD
WIVDLGPEGGHRGGTILVTGTPEDVAACPDSYTGQFLARMLPSTSARPDQPAAVANKPDA
RPPRKVKPEKPAKKAAAAKSTGKASKTATAGTKKKKDA
NT seq 2997 nt   +upstreamnt  +downstreamnt
atggcgatggatttcatccgcatccgcggcgcgcggacgcacaacctcaagaacatcgac
ctcgacctgccccgcgacaaactgatcgtgatcaccggcctgtccggctcgggcaagtcg
tcgctggcgttcgacaccatctatgccgagggtcagcggcgttacgtcgagtccctgtcg
gcgtacgcgcggcagttcctgagcgtgatggaaaagccggacctggaccacatcgaaggc
ctgtcgccggcgatctcgatcgagcagaagtcgacctcgcacaacccgcgctcgacggtc
ggcaccatcaccgagatctacgactacctgcgcctgctgtatgcacgcgtcggcacgccg
cgttgccccgaccacggctatccgctggaagcccagacggtcagccagatggtcgaccat
atgctgacgctggacccggaacagcgctacatgctgctggcgccggtgatccgcgaccgc
aagggcgagcacgcgcaggtgttcgaccagctgcgcgcacagggcttcgtgcgtgtacgc
gtggatggcgaactgtacgaaatcgacgcggtgccgccgctggcgctgcgccagaagcac
accatcgaagcggtgatcgatcgcttccgcccgcgcgaagacatcaagcagcgcctggcc
gagagcttcgaaactgccctgaagctgggtgatggcatggcgtcggtgcagtcgctggac
gatgccgctgcgacccctaccctgttctcgtccaagtattcctgcccggtctgcgactac
tcgctgccggaactggagccgcgcctgttctcgttcaacgcaccgatgggcgcctgcccc
ggctgcgacgggctgggcatggccgagttcttcgatccctcgcgcgtggtggtgcatccg
gagctgtcgctggcggccggtgccgtgcgtggctgggatcgccgcaacgcctattacttc
cagctgatcgcctcgctggccaagcactacaagttcgacaccgacgcggcgtggaactcg
ctgccggcaaaggtgcagcaggccgtgctgtacggcagtggcgaggacgcgatcaccttc
acctacttcaccgaggccggtggccgcacccagcgcaagcaccgcttcgaaggcatcatt
cccaacctcgaacgccgctacaaggaaaccgaatcggcggcggtgcaggaagagctgggc
aagtacatcagcgaacatgcctgccccgagtgcaacggcgcgcgcctgaacaaggccgca
cgcaacgtgttcgtggcggatcgaccgctgccggaactggtggtgctgccgatcgacgaa
gcgctgaagttcttcagtgaactgagcctgccgggctggcgtggcgagatcgctgcgaag
atcgtcaaggagatcggcgaacgcctcggcttcctggtcgacgtcggcctggattacctg
accctggagcgcaaggccgacaccctgtccggtggcgaggcgcagcgcatccgtctggcc
agccagatcggtgctggtctggtgggcgtgatgtacgtgctcgatgagccgtccatcggc
ctgcaccagcgcgacaacgagcgcctgctgggcaccctcacccgcctgcgcgaccttggc
aacacggtgatcgtggtcgagcatgacgaagacgcgatccgactggccgactacgtgctg
gacatcggtcccggcgcgggcgtgcatggcggcgagatcgtcggccagggcagcctgcag
gacctcctcgatgcaccgcgttcgctgaccggccagtacctgtcgggcaagcgcgcgatc
aagatcccggcgcgccggcacaagccgaacccgaagatgacgctgcatctgcgtggcgcc
accggcaacaacctgaagggcgtggacctggccatcccggcggggctgctgacctgcgtg
accggcgtgtccggctcgggcaagtcgaccctgatcaacgacaccctgttctcgctggct
gccaacgagatcaacggcgcctcgcacccgatcgcgccgtacaaggagatcgatggcctg
gacctgttcgacaaggtggtggacatcgaccagtcgccgatcggccgcaccccgcgctcg
aacccggccacctacaccggcttgttcactccgctgcgcgagctgttcgcacaggtgccc
gaatcgcgtgcgcgcggctattcgccgggacgcttcagtttcaacgtgcgtggcggccgc
tgcgaggcctgccagggcgatggcctgatcaaggtcgagatgcacttcctgcctgacgtg
tacgtgccctgcgacgtctgccatggcaagcgctacaaccgcgaaacgctggagatcctg
tacaagggcttcaacatcaacgacgtgctggaaatgaccgtcgaagatgcactgaagctg
ttcgaaccggtcccgtccatcgcccgcaagctggagaccctggttgatgtcggcctgagc
tacatcaagctggggcagagcgcgaccacgctgtccggtggtgaagcgcagcgcgtgaag
ctgtccaaggaactgtcgcgccgcgataccggccgcaccctgtacatcctcgacgagccg
accaccggcctgcacttccacgacatcgaggcgctgctgggcgtgctgcacaagctgcgc
gacgagggcaacacggtggtggtgatcgagcacaacctggacgtcatcaagaccgcagac
tggatcgtcgacctgggtccggaaggcggtcatcgcggcggcaccatcttggtgaccggt
acgccggaagacgtggccgcatgcccggattcgtataccggccagttcctcgcacggatg
ctgccgtccaccagcgcgcgaccggaccagcccgccgccgtggccaacaagcccgatgcg
cgcccgccgcgcaaggtgaagcccgagaagccggcgaagaaggcagccgccgccaagagc
accggcaaggccagcaagaccgccacggccggcaccaagaagaagaaggacgcctga

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