Stenotrophomonas sp. MYb57: CLM74_07030
Help
Entry
CLM74_07030 CDS
T05384
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
stem
Stenotrophomonas sp. MYb57
Pathway
stem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLM74_07030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stem03019
]
CLM74_07030
03009 Ribosome biogenesis [BR:
stem03009
]
CLM74_07030
Enzymes [BR:
stem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CLM74_07030
Messenger RNA biogenesis [BR:
stem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CLM74_07030
Ribosome biogenesis [BR:
stem03009
]
Prokaryotic type
rRNA helicases
CLM74_07030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DUF6702
Motif
Other DBs
NCBI-ProteinID:
AVJ32546
LinkDB
All DBs
Position
1537784..1539712
Genome browser
AA seq
642 aa
AA seq
DB search
MSQETQAQLQFAQLGLSDSVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKT
AAFALPVLSNIDLQQIKPQALVLAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQ
QLTALRRGVHIVVGTPGRVIDHLNRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKL
PEKRQVALFSATMPPAIRRIAQTYLKDPVEVTIATKTTTSANIRQRYWWVSGMHKLDALT
RILEVEPFDAMIVFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKLD
ILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFATPREKGML
RQIERATRQPIEEMQLPSVEAVNDNRINKFTSRITETLGQGGLDFYRQLLERFESEQNVP
AIEVAAALAKMMQGDTPFLLQPPVRAPREERAPRERFERTERPERGDRNERGPRFERGPR
RDDAEGGFEQRPRRDVPPRGAPEQGMETYRISVGHQHGVKPANIVGAIANEAGLESRFIG
RIDIHDDFSLLDLPAQMPSDVLTHLQKVWVSGQQLQMRPLAAGEEVNPAPRPFKPRFDKR
GPGGPGGPGAPRRSGPGGPGGDRDSRPPRRDGFNKPRGPRSF
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaagaaacccaagcgcagctgcagttcgcgcagctcggcctgtccgattctgtc
atgcaggctgtcactgccatcggctacgaaacgccgtcgccgatccaggctgccaccatc
ccggcgatgctggaaggccgcgacgtgctgggccaggcccagaccggtaccggcaagacc
gcggccttcgcgctgccggtgctgtccaacatcgacctgcagcagatcaagccgcaggcc
ctggtgctggccccgacccgcgagctggccatccaggttgccgaggcgttccagtcctat
tcctccaagatccccggtttccgcgtgctgccggtgtacggcggccagccgtacggccag
cagctgacggccctgcgccgcggcgtgcacatcgtggtcggtacccccggccgcgtcatc
gaccatctgaaccgcagcacgctggacctgtccgagctgaagacgctggtgctggacgaa
gccgatgaaatgctgcgcatgggcttcatcgacgacgtcgaagcggtgctgaagaagctg
ccggagaagcgccaggtggcgctgttctcggccaccatgccgccggccatccgtcgtatc
gcgcagacctacctgaaggacccggtcgaagtcaccatcgcgaccaagaccaccacctcg
gccaacatccgccagcgctactggtgggtgagcggcatgcacaagctggacgcgctgacc
cgcatcctcgaagtcgagccgttcgacgcgatgatcgtcttcgcgcgcaccaaggccggc
accgaagaactggccagcaagctgcaggcccgtggcctggccgctgccgccatcaacggt
gacatgcagcaggcccagcgtgagcgcaccatcgccatgctgaaggaaggcaagctggac
atcctggtcgccaccgacgtggccgctcgtggactggacgtggaacgcatcagccacgtg
ctgaactacgacatcccgtacgacaccgaaagctacgttcaccgcatcggccgtaccggc
cgcgccggccgcagcggtgaagcaatcctgttcgccaccccgcgcgaaaagggcatgctg
cgccagatcgagcgtgcgacccgccagccgatcgaagaaatgcagctgccgagcgtggaa
gcggtcaacgacaaccgcatcaacaagttcacctcgcgcatcaccgagacgctgggccag
ggcggcctggacttctaccgccagctgctggagcgtttcgagtccgaacagaacgtgccg
gccatcgaagtggccgccgcactggcgaagatgatgcagggcgataccccgttcctgctg
cagccgccggtgcgtgcaccgcgcgaagaacgtgcgccgcgcgagcgtttcgagcgcacc
gagcgcccggaacgtggcgaccgcaacgagcgcggcccgcgcttcgagcgtggcccgcgt
cgtgacgatgccgagggtggcttcgagcagcgcccgcgccgtgacgtgccgccgcgcggt
gcaccggagcagggcatggagacctaccgcatttcggtcggccaccagcatggcgtgaag
ccggccaacatcgtcggcgccatcgccaatgaagccggcctggaaagccgcttcatcggt
cgtatcgacatccacgacgacttctcgctgctggatctgccggcacagatgccgtcggac
gtgctgacccacctgcagaaggtctgggtgtccggccagcagctgcagatgcgcccgttg
gccgccggtgaagaggtcaatccggcgccgcgtccgttcaagccgcgcttcgacaagcgt
ggtccgggtggtccgggtggcccgggagctccgcgccgcagcggtccgggtggccccggc
ggcgaccgcgacagccgtccgccgcgtcgtgatggcttcaacaagccacgtggcccgcgc
agcttctaa
DBGET
integrated database retrieval system
