Stenotrophomonas sp. MYb57: CLM74_09195
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Entry
CLM74_09195 CDS
T05384
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
stem
Stenotrophomonas sp. MYb57
Brite
KEGG Orthology (KO) [BR:
stem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
stem03009
]
CLM74_09195
Enzymes [BR:
stem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CLM74_09195
Ribosome biogenesis [BR:
stem03009
]
Prokaryotic type
rRNA helicases
CLM74_09195
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
PRAI
Motif
Other DBs
NCBI-ProteinID:
AVJ32936
LinkDB
All DBs
Position
complement(1983678..1985054)
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AA seq
458 aa
AA seq
DB search
MTDFSTLPLSPALQPGLDALGYTTLTPIQAQSLPAILDGRDVIAQAPTGSGKTAAFGLGL
LQSIDTSLIRVQALVLCPTRELADQVAKQIRKLATGIPNLKLLLLTGGTPLGPQLASLES
HDPHVVVGTPGRVQELARKRALNLGAVRTLVLDEADRMLDMGFEEPIREIAGRTHRDRQS
LLFSATFPDTIRAMARDLLRDAVEVTVEGADQAPAIRHLFCEVEPAHRQKALAGLLLKYT
PESAVVFCNTRKDVDEVANSLQQFGFSALALHGDMEQRDREEVLLRLANRSCNVLVASDV
AARGLDVEELAAVINYELPTDVESYQHRVGRTGRAGASGLAISLVAGREKNRADAIEAQR
GEPLDWQKTPLATSRPAELPQAAMRTLRIDGGKTDKLRAGDILGALTGDAGLSAKFIGKI
AIFPTRSYVAIAREQVNKAVAKLEAGKIKGRRFRVRMM
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgactgatttctcgaccctgccgctgagcccggccctgcagcccggcctggatgccctc
ggctacaccaccctcacgccgatccaggcgcagagcctgcccgccatccttgatggccgc
gatgtgatcgcccaggccccgaccggcagcggcaagaccgccgccttcggtcttggcctg
ctgcaatccatcgacaccagcctgatccgcgtacaggcgctggtgctgtgccccacccgc
gagctggccgaccaggtggccaagcagatccgcaagctggccaccggcatccccaacctg
aagctgctgctgctgaccggcggcacgccgctgggcccgcagctggcgtcgctggaaagc
cacgacccgcacgtagtggtcggcacgcccggccgcgtgcaggaactggcgcgcaagcgc
gcactgaatctgggcgccgtgcgcacgctggtgctggatgaagccgaccgtatgctcgat
atgggcttcgaggaaccgatccgtgagatcgccggccgtacccaccgcgatcgccagagc
ctgctgttctcggcaaccttccccgacaccatccgcgccatggcccgcgacctgctgcgc
gatgccgtggaagtgaccgtggaaggcgccgaccaggccccggccatccgccacctgttc
tgcgaagtcgaaccggcacaccggcagaaggcactggccggcctgctgctgaagtacacg
cccgaatcggccgtggtgttctgcaacacccgcaaggacgtggacgaagtggccaactcg
ctgcagcagttcggcttctccgcgctcgccctgcatggcgacatggaacagcgcgaccgc
gaggaagtgctgctgcgcctggccaaccgcagctgcaacgtgctggttgccagcgacgtc
gccgcacgcgggctggatgtggaagaactggccgcggtgatcaactacgagctgccgacc
gacgtcgagagctaccagcaccgtgtcggccgtaccggtcgtgccggcgccagtggcttg
gcgatcagtctggtggcgggccgcgaaaagaaccgcgccgacgccatcgaagcacagcgc
ggcgagccgctggattggcagaagacgccgctggcgacgtcgcgcccggccgagctgccg
caggcggcgatgcgcaccctgcgcatcgatggcggcaagaccgacaagctgcgcgcaggc
gacatcctcggcgccctcaccggcgatgccggcctgtcggccaagttcatcggcaagatc
gcgatcttcccgacccgttcctacgtggcgatcgcccgcgagcaggtcaacaaggcggtg
gcgaagctggaagcgggcaagatcaagggccgtcgtttccgcgtgcggatgatgtaa
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