Stenotrophomonas sp. MYb57: CLM74_10190
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Entry
CLM74_10190 CDS
T05384
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
stem
Stenotrophomonas sp. MYb57
Pathway
stem03410
Base excision repair
stem03430
Mismatch repair
stem03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
stem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CLM74_10190 (recJ)
03430 Mismatch repair
CLM74_10190 (recJ)
03440 Homologous recombination
CLM74_10190 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stem03400
]
CLM74_10190 (recJ)
DNA repair and recombination proteins [BR:
stem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CLM74_10190 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CLM74_10190 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CLM74_10190 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AVJ35274
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Position
2212277..2214034
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AA seq
585 aa
AA seq
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MSLAADAALPSSDTPMIRRRDAVVPGSWPEGTLPLLARLYAARGAHTPELALPKLGNLHA
PELLTGVDAAVDLLVQAIAADKRILVVGDFDCDGATACAVGVRGLRMLGAQHVFHAVPNR
MVHGYGLSPSLVDELAALQPDLLVTVDHGIACHAGVTAAKARGWQVLVTDHHLPGPLLPP
ADVIVDPNLDGDAFPSKALAGVGVIFYVLMALRRQMREAGVFADGKGPDLTTLLDLVAVG
TVADLVVLDANNRALVSAGLRRLRNGQGCVGLKALIEASGRDAARLTATDIGFGLGPRLN
AAGRLEDMALGIALLLTEDPRQARDIAQTLEQINAERRAVQQSMTDDAEHALSQVVLDTA
GQRPVAACLFDADWHPGVVGLVASKMKDRLHRPVIAFAPAEPGADTLRGSARSIAGLHIR
DALALVDARHPGLIERFGGHAMAAGLSMRLDHLAAFEAAFVATVLEMLDPAALQQQVLSD
GELAADELDHRHADALRLAGPWGQGFPEPLFDGHFEVANWRVLKERHLKLELRLPGVPGT
INAIHFGGWHGNAPGRHVHLAYRLACDDYRGGAAIQLIVEHCLPA
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atgtcccttgccgccgatgctgcgctgccgtcttccgatacgccgatgatccgccgtcgc
gatgcggtcgtgcccggtagctggccggagggcacgctgccgctgctggcccgcctgtat
gccgcacgtggtgcgcacacgcccgagctggccctgcccaagctcggcaacctgcatgcg
ccggaactgctgaccggcgtcgacgcggcagtggacctgctggtgcaagccatcgccgcc
gacaagcgcatcctggtagtcggtgatttcgactgcgacggcgcaaccgcctgcgcggtc
ggtgtgcgcggtctgcgcatgctcggcgcgcagcacgtcttccacgcagtgcccaaccgc
atggtgcacggctatggtctgtcgccgtcactggtggacgagctggctgcgctgcagccg
gatctgctggtcaccgtcgaccacggcattgcctgccatgccggcgtgaccgcggccaag
gcgcgtggctggcaggtgctggtgaccgatcaccatctgcccggtccactgctgccaccg
gccgatgtcatcgtcgaccccaacctcgacggcgacgccttccccagcaaggcgctggcc
ggtgtcggcgtgatcttctacgtactgatggcgctgcgccggcagatgcgcgaagcgggg
gtatttgccgatggcaaagggccggacctgaccacgctgctggacctggtggcggtgggc
acagtggccgacctggtggtgctcgatgccaacaatcgcgccctggtcagcgcaggattg
cgcaggctgcgcaatggccagggctgcgtcggcctgaaggcattgatcgaggccagcggc
cgcgatgccgcacgcctgaccgccaccgacatcggcttcgggctcggcccgcgcttgaac
gcggccggtcggttggaagacatggcattgggtatcgccctgctgctcaccgaagatccg
cggcaagcccgcgacatcgcgcagacgctggaacagatcaacgccgagcggcgtgcggtc
cagcagtcgatgaccgatgacgccgaacacgcgctgtcgcaggtggtgctcgataccgca
gggcagcgcccggtggcggcctgcctgttcgatgctgattggcaccccggcgtggttggc
ctggttgcttcaaagatgaaggatcgcctgcatcggccggtgatcgcgttcgcgccggcc
gagccgggcgccgacaccctgcgcggctcggcgcgttcgatcgccggcctgcatatccgt
gatgcgctggcgctggtcgatgcgcgccatcccggcttgatcgagcgcttcggcggtcac
gcgatggccgccgggttgagcatgcgcctggatcatctggctgccttcgaagccgcgttc
gtcgccaccgtgctggaaatgctcgacccggctgcactgcagcagcaggtgctcagcgac
ggcgaactggccgcggacgaactcgatcatcgccatgccgatgcgctgcgtttggcgggg
ccatgggggcagggctttcccgagccgctgttcgatggccacttcgaagtggccaactgg
cgcgtgctgaaggaacggcatctgaagctggaactgcgcctgcccggcgtacccggcacg
atcaacgcgatccatttcggcggctggcacggcaatgcgcccggtcgccacgtgcatctc
gcctaccggctcgcctgcgatgactatcgtggcggcgccgccatccagctgatcgtcgag
cactgcctgccggcgtag
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