Stenotrophomonas sp. MYb57: CLM74_15770
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Entry
CLM74_15770 CDS
T05384
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
stem
Stenotrophomonas sp. MYb57
Brite
KEGG Orthology (KO) [BR:
stem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
stem03009
]
CLM74_15770
Enzymes [BR:
stem01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
CLM74_15770
Ribosome biogenesis [BR:
stem03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
CLM74_15770
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
Methyltr_RsmB-F
MTS
Cons_hypoth95
RrnaAD
Methyltransf_ANTKMT
Methyltransf_11
PCMT
TRAM
TRM5-TYW2_MTfase
Methyltransf_15
Methyltransf_23
Methyltransf_12
PrmA
Motif
Other DBs
NCBI-ProteinID:
AVJ34124
LinkDB
All DBs
Position
complement(3431181..3432515)
Genome browser
AA seq
444 aa
AA seq
DB search
MARSRSRIDRTPFQTEILDLSHDGRGVARREGEGGKVTFISGALPGEVVMAEQTARSRHF
DEARTVEVLQASPQRVTPKCPHFGTCAGCVLQHLDEDQQIVAKQRVLMDNLERIGHVKPG
TVLPPLVGDSWGYRRKGRFSVRRVEKKDKTLVGFREQDPRFVADLQQCLTVIPEIGTKVE
VLSTFIESLDGKRDIPQIEFIAGDQAVVLTVRHLQPLSDADRAAWAAFGQQHGFVIYLQS
GGVDTVQPLDGQGVALSFRLAPWDVELAFRPLDFIQVNAKLNEKMIGHALDLLEPGADER
VLDLFCGLGNFTLPLARKVREVVGVEGDAGLVARARENAERNGLANAQFYSADLTQDQRS
TAWMRQGFDKLLLDPPRSGAIEVLQQLPLKQFKRIVYVSCHPGSLARDAGYLVNEQGFTL
VSAGAMDMFPHTAHVESIAVFEKR
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
gtggcccgatcccgctcccgcatcgaccgtactcccttccagaccgagatcctcgacctc
agccatgatggtcgcggtgttgcccgccgtgaaggcgagggcggcaaggtcaccttcatc
agcggcgccctgccgggcgaagtggtgatggccgaacagaccgcccgcagccgccacttc
gatgaggcgcgcacggtggaagtgctgcaggcctcgccgcagcgggtgacccccaagtgc
ccgcatttcggcacctgcgccggctgcgtgctgcagcacctggacgaagaccagcagatc
gtcgccaagcagcgcgtgctgatggacaacctggagcgcatcggccatgtgaagccgggc
accgtgctgccgccgctggtgggtgacagctggggctaccgccgcaagggccggttctcg
gtgcgccgagtcgagaagaaggacaagaccctggtcggcttccgcgagcaggacccgcgc
ttcgtcgcggatctgcagcagtgcctgaccgtgatcccggaaatcggcaccaaggtggag
gtgctgtcgaccttcatcgaatccctggatggcaagcgcgacatcccgcagatcgagttc
atcgccggtgaccaggccgtggtgctgaccgtgcgccacctgcagccgctgagtgatgcc
gatcgcgccgcctgggcggccttcggccaacagcacggctttgtcatctacctgcagtcg
ggcggcgtggataccgtgcagccgctggacgggcagggcgtggcgctttcgttccggctg
gcgccgtgggatgtcgaactggcgttccgtccgctggatttcatccaggtcaatgccaag
ctcaacgagaagatgatcggccacgcgctggacctgcttgaaccgggtgccgacgagcgc
gtgctggacctgttctgtggcctgggcaacttcaccctgccgctggcgcgcaaggtgcgc
gaagtggtgggcgtggaaggtgatgccgggctggtggcgcgtgcgcgtgagaacgccgag
cgcaacgggctggccaacgcgcagttctacagcgccgacctcacccaggaccagcgcagc
acggcgtggatgcgccagggctttgacaagctgctgctggatccgccgcgttcgggcgcc
atcgaagtgctgcagcagctgccgttgaagcagttcaagcgcatcgtctatgtcagctgc
catccgggctcgctggcccgcgatgcaggctacctggtcaacgaacagggcttcaccctg
gtcagcgccggtgcgatggacatgttcccgcataccgcgcacgtggaaagcatcgcggtg
ttcgaaaagcgctga
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