Stenotrophomonas sp. MYb57: CLM74_16480
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Entry
CLM74_16480 CDS
T05384
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
stem
Stenotrophomonas sp. MYb57
Pathway
stem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLM74_16480 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stem03019
]
CLM74_16480 (recQ)
03400 DNA repair and recombination proteins [BR:
stem03400
]
CLM74_16480 (recQ)
Enzymes [BR:
stem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CLM74_16480 (recQ)
Messenger RNA biogenesis [BR:
stem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CLM74_16480 (recQ)
DNA repair and recombination proteins [BR:
stem03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CLM74_16480 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
ResIII
PSD2
Motif
Other DBs
NCBI-ProteinID:
AVJ34261
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All DBs
Position
3610407..3612212
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AA seq
601 aa
AA seq
DB search
MASRPAHDLLRRVFGYDDFRGPQQDIVEHVAAGHDALVLMPTGGGKSLCYQVPALLRDGC
GIVISPLIALMQDQVEALRQLGVRAEFLNSTLDAETAGRVERELLAGELDMLYVAPERLL
TGRFLSLLSRSRIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWPEIPRIALTATADPP
TQREIAERLDLAEARHFVSSFDRPNIRYTVVQKDNARKQLSDFLRSHRSEAGIVYCMSRR
KVEETAEFLCTQGFNALPYHAGLPAEVRANNQRRFLREDGIVMCATIAFGMGIDKPDVRF
VAHTDLPKSMEGYYQETGRAGRDGEAAEAWLCYGLGDVVLLKQMIEQSEASEERKQLERS
KLDHLLGYCESMQCRRQVLLAGFGETYPKPCGNCDNCLTPPAAWDATIPAQKALSCVYRS
GQRFGVGHLIDVLRGSENEKVKQQGHDKLSTYAIGRDLDARTWRSVFRQLVAASLLEVDS
EGHGGLRLTDASRDVLTGRRQISMRRDAVSASAGRERSAQRTGLSVLPQDLALFNALRGL
RAELAREQNVPAFVIFHDSTLRNIAEQRPTSLDELARVGGIGGTKLSRYGPRLVEIVREE
G
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atggcttcccgtcccgcgcacgacctgctccgccgcgtctttggttacgacgatttccgt
ggtccgcagcaggacatcgtggagcatgtggctgccggtcacgatgccctggtgctgatg
cccaccggcggcggcaaatcactgtgctaccaggtgcccgccctgctgcgtgacggctgt
ggcatcgtcatctcgccgctgatcgcactgatgcaggaccaggtcgaagccctgcgccag
ctcggcgtgcgcgccgaattcctgaactcgaccctggacgccgaaacggccggccgggtc
gaacgcgaactgctcgccggtgagctcgacatgctctatgtcgctcccgagcgcctgctg
accggccgcttcctgtcgctgctgtcgcgcagccggatcgccctgttcgccatcgacgaa
gcccattgcgtgtcgcaatggggccacgacttccgccccgaataccggcagctgaccgtc
ctgcacgagcgctggccggagattccgcgaatcgccctgaccgctaccgccgacccgcca
acccagcgcgagatcgccgagcggctggacctggccgaagcacgtcacttcgtcagctcc
ttcgatcgccccaacatccgctacaccgtggtgcagaaggacaacgcccgcaagcagctg
agcgatttcctgcgcagccatcgcagcgaggccggcatcgtctactgcatgtcacggcgc
aaggtggaggaaaccgccgagttcctgtgcacgcaagggttcaacgccctgccctaccac
gccggcctgcccgcggaagtgcgtgccaacaaccagcgccgtttcctgcgcgaggacggc
atcgtcatgtgcgcgaccatcgccttcggcatgggcatcgacaagccggacgtacgcttt
gtcgcccataccgacctgcccaagtcgatggaaggctactaccaggaaaccggccgcgcc
gggcgcgatggcgaagccgccgaggcctggctctgctacggcctgggcgatgtggtactg
ctcaagcagatgatcgagcagtccgaggccagcgaggagcgcaagcagctggagcggtcc
aagctcgaccacctgctgggctactgcgaatcgatgcagtgccgccgccaggtgctgctg
gccggtttcggcgagacctatcccaagccctgcggcaactgcgataactgcctcaccccg
ccggcggcctgggacgccaccatccccgcgcagaaggcgttgagctgtgtataccgcagt
ggccagcgcttcggcgtcggccacctgatcgacgtcctgcgcggcagcgagaacgagaag
gtcaagcagcagggccacgacaagctgagcacctacgccatcggccgcgacctggacgcg
cgcacctggcgcagcgtgttccgccagctggtggccgccagcctgctggaagtggacagc
gagggccacggtggcctgcgcctgaccgatgccagccgcgatgtgctgaccggtcgccgc
cagatcagcatgcgccgcgatgcagtcagtgccagcgccgggcgcgaacgcagcgcgcaa
cgcaccggcctgtcggtgctgccgcaggacctggccctgttcaatgcgctgcgcggcctg
cgcgccgagctggcgcgcgagcagaacgtgccggccttcgtgatcttccacgacagcacc
ctgcgcaacatcgccgaacagcgcccgacctcgctggacgagctggcccgggtcggtggc
atcggcggcaccaagctcagccgctatggcccgaggttggtcgagatcgtgcgcgaagag
ggatga
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integrated database retrieval system
