Stenotrophomonas sp. MYb57: CLM74_20090
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Entry
CLM74_20090 CDS
T05384
Name
(GenBank) type IV secretion protein Rhs
Organism
stem
Stenotrophomonas sp. MYb57
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHS_repeat
DUF6531
RHS
Motif
Other DBs
NCBI-ProteinID:
AVJ34925
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All DBs
Position
complement(4412446..4417227)
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AA seq
1593 aa
AA seq
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MLKRLKDLSCAVLAMAALGCVGTTAVQAQEVQKEWTAFASGYQKRATEKLVQKDIETRYA
AHQQYGAFSWEVRRATVLPNKVVYDYAIKPAKLIKTDWKYDHGGKTYDSEESLFQAMKDA
RPQHPSCPRTQVSMTTPWKGIPGGGEGAGADGSNVGEDGEATVAHYTFSEATSACSLMEG
RTYLQRKREVKCPNISTTVMKWREDLQMCGMPPSLDTGTTSAVRMYSSTPIAKQCDATGN
PCDPTTGDKSQPEPDFDLGWISFRRHYHSLTSTPGSALGTGWTHSHNLRLTLGVDNTVFP
PSTEVNVGLLGEDGAQTAFPKRGAYYEANDGSGDRVVQRGSNWLLSRTQEQITFDASGRM
LRRDFEDGTSLSYSHDVRGRLLSITHSTGRRLDVQYAVAGDDSLISALSVAGRNVVTYGY
TAMAELSTATYADGGVRTYHYEDARFPGYLTGVTAEDSRRYSWFAYDAKGRVTCSRHSGD
CTQADVGIDGVRLDYTTAGPVIVTDALGKQSTYALTASGTSGLPRKVNGITDSSGTAGRT
YLPEGTDFRRRLQSSTDRRGVVTQYAYTEASDPTAGAVAVTTTTEAAGTPEQRISETRVA
LDSNRLVQQTVGNQETRIARNARLQPTSVTVRDAATNHTRVTTQNYCEAEGQDCPQVGLL
RSIDGPRTDVADTVTYAWYTADDAGCATNGTCAFRKGDLRSVTSALGHTVESLAYDAFGR
PLSVRDANGVVTDYTYHPRGWPTSVTVRGATTAEDRSTQLSYWPTGQVQQVTEPDGSSVT
YVYDAAQRLTDIADSAGNTIHYTLDNAGNRLQENTVDAGGALRRTLARVYNTLGQLTALK
DAGNNATGFAYDANGNPQSVTDVLQRVTNQQYDPLNRLAQSLQDVGGVAAEIRSQYNALD
QVTQVIDPKGLHTTYAYNGFGDLTGQVSPDSGNTTFTVDAAGNRKTRTDARGVTATYSYD
ALNRLVGIAYPDPNLDVGYHYDTAPAVCASDERFAKGRLGQVLHANGSTVYCHDRFGQVT
RKVQTINGVASTLRYAYSKSGRLTALTYPDGSVADYVRDAQGRISQIGLTRPGQARQAVV
NNVTYAAFGPATGWTYGNGRQLQRPLDLDYRPQAVHDPAAGGLSLGYGYDPVGSITELKN
GAGSEVLAKYAYDTLGRLTQTQDGATGTAIETYGYDATGNRTSLTTSAGTASYTYPADSH
RLIAVDGQARNQDAAGNTTSIGSKTFAYNDANRMSAVKQGAAVVESYGYNHRGERVLRAP
ASDDAQVTVYDEAGQWVGNYSATGQAQQQAIWLDNYPVALIQTPGTGVPELAYIQPDHLG
TPRVVIDPIRDVVIWEWSNKSEVFGDQAPANDPDGDGVVFDLALRFPGQQATDASGLFYN
YQREYDPAVGRYSQSDPIGLEGGVSTFIYATGNSVEFTDPLGLNKQVGVGGSAGGAGPGV
AVTGSINVGVSIPKNLGNVSCYQIYGSLQISGMLGGGAYLGAGTSISASESSGPLPDRSW
GVYRYSEVAGGWGPSIGGSVQGSTNLLEGNKEGDNWAWLRRLFSLEDMERDKMSGGSISI
PPLPGVGFGAMTGSGYTISGQMATPTGKGCGCP
NT seq
4782 nt
NT seq
+upstream
nt +downstream
nt
atgttgaagcgattgaaggatctgtcgtgcgcagtgctggcgatggccgcgctggggtgc
gtgggtaccactgcggtgcaggcgcaggaggtgcagaaggagtggacggcgtttgccagt
ggctatcagaagcgggcaaccgaaaagctcgtgcagaaagacatcgaaacccgctacgcg
gcgcatcagcagtatggggcattcagttgggaagtccggagagcgacggtcctgcccaac
aaggttgtctatgactacgcgatcaagcccgcgaagctgatcaagaccgattggaagtac
gaccacggtggcaaaacgtatgactcggaggaaagtctctttcaagcgatgaaggatgcc
aggcctcagcatccgtcctgtccccgcacccaggtatcaatgacaacgccatggaagggc
attcccggcggtggagagggcgccggcgcagacggcagcaatgtcggcgaggacggagag
gccactgttgcccattacactttcagcgaggcgacgtctgcatgctcgctgatggaaggc
cggacctatcttcagcgaaagcgtgaggtgaagtgcccgaacatcagcactacggtcatg
aagtggcgtgaagatcttcagatgtgtggcatgccaccgtctctggatactggcacaacg
tccgctgtccggatgtatagcagcactcccatcgcgaaacagtgcgatgcaaccgggaat
ccttgtgaccctacaaccggtgacaaatcccagcccgagccggacttcgatctgggctgg
ataagcttccgtcgtcactatcactccctgaccagcacgcccggcagcgcgctgggcacg
ggttggacgcattcgcacaaccttcgactgacgctgggtgtggataacactgttttccca
cccagcacggaagtaaatgtaggactgctcggcgaagacggtgcgcagacggcgttcccc
aagagaggagcgtactacgaggccaacgatggcagcggggaccgcgtagtgcagcggggc
agcaactggctgctgtcgcgcactcaggagcagatcacgttcgatgcgtcaggtcgcatg
ctgcgacgcgatttcgaggatggtacttcgctcagctactcgcacgacgtgcggggtcga
ttgctcagcatcacgcactccacgggccgccgtctggacgtgcagtacgcggttgcgggt
gatgactcattgatctcggcgctgtcggtggcggggcggaatgtggtgacctacggctat
acagccatggctgaactgagtaccgcaacctatgccgacggcggagtaaggacctatcac
tacgaagatgcccgcttccctggatacctgacaggcgtcaccgccgaggatagccggcgc
tatagctggtttgcctacgacgccaaggggcgtgtgacctgcagccgtcattcgggcgac
tgcacacaggcggatgtaggcattgatggggtgcggctggattacacgaccgccggcccg
gtcatcgtcaccgatgcactcggcaagcagagcacgtacgcgcttaccgcaagcggcacc
agcggcctgccacgcaaggtcaatggcatcactgacagcagcggcaccgccggtcgtacc
tacctcccagagggcacggacttccgccgccgcctgcagtcgtcgaccgaccgacgcggc
gtggtcacccagtacgcctacaccgaggccagcgacccgaccgccggtgcagtagccgtg
acaacgacgacggaagcggcgggtacccccgagcaacgcatcagcgagacgcgtgtcgcg
ctcgatagtaatcgcctcgtgcagcagacggtcggcaaccaggaaacccgcattgcccgc
aacgcgcgcctgcagccgaccagcgtcaccgtgcgcgatgcagcgaccaaccatacccgc
gtgaccacgcagaactattgtgaagccgaaggtcaggactgcccgcaggtgggcctgctg
cgaagcatcgacggtccgcgtacggacgtggcagataccgtgacctatgcctggtacacc
gccgacgatgcagggtgtgcgaccaacggcacctgtgcgttccgcaagggcgatctgcgc
agcgtcaccagtgcgttgggccataccgttgagtccctcgcttacgatgccttcgggcgc
ccgttgtcggtgcgtgatgccaatggcgtggtgaccgactacacctatcacccacgtggc
tggccgacgtcggtcaccgtgcgtggcgccaccactgccgaagatcgcagcacccagctg
agctactggcccaccggccaggtgcagcaggtcaccgagcccgacggcagcagcgtcacc
tatgtctacgacgccgcccagcggctcaccgacattgccgacagtgcgggcaacaccatt
cactacaccttggacaacgccggcaaccgtctgcaggaaaacacggtcgatgcagggggt
gcgctgcgccgcacgctggcccgtgtctacaacaccctcgggcagctgaccgcgctgaag
gatgccggcaacaacgccaccggctttgcctacgacgccaatggcaatccgcagtcggtc
accgatgtcctgcagcgggtgacgaaccagcagtacgatccgttgaaccggctggcgcag
tccctgcaggacgtgggcggtgttgctgcggaaatccgcagccagtacaacgcgctggat
caggtcacccaggtaatcgatcccaagggcctgcacaccacctacgcctacaacggcttt
ggtgatctgaccggacaggtcagcccggatagcgggaacactactttcacggttgacgcc
gccggcaaccgcaagacccgcactgatgcgcgcggcgtgaccgccacctacagctacgac
gcgctcaatcgactggtcggcattgcctatccggatcccaacctggacgtgggctatcac
tacgacaccgcacccgcggtatgtgccagcgacgagcgcttcgccaagggtcgcctgggc
caggtgctgcacgccaatggcagcaccgtgtactgccatgaccgcttcggccaggtcacc
cgcaaggtgcagacgatcaatggtgtagccagcacgctgcgctacgcctacagcaagtcc
ggtcgcctgaccgcgttgacctacccggacggcagcgttgccgactatgtgcgcgacgcc
caggggcggatcagccagattggcctgacccgcccgggacaggcccggcaggcggtggtc
aacaacgtgacctatgcagccttcgggccggcgaccggctggacctacggcaacggccgc
cagctgcagcgcccgcttgatctggactaccgtccgcaggcggtgcatgaccccgcggcg
ggcggtctgtcactgggctatggctacgatcccgtcggctcgatcaccgagctgaagaat
ggcgcaggctcggaagtgctggccaagtatgcctacgacacgctcggccgactgacccag
acccaggacggtgcgacgggcacggcgattgagacctatggctacgacgccaccggcaac
cgcacctcgctgaccacctcggccgggaccgccagctacacctatccggctgacagccat
cgactgattgccgtggatggtcaggcgcgcaaccaggatgccgcaggcaacaccaccagc
attggcagcaagacgttcgcctacaacgatgccaatcgcatgagtgcggtgaagcagggt
gctgctgtcgtggagagttacggctacaaccaccgcggtgagcgcgtgttgcgtgcgcca
gccagtgacgatgcgcaggtcactgtctatgacgaagccgggcagtgggtcggcaactac
tcggcgaccgggcaggcgcagcaacaggcgatctggctggacaactacccggtggcgttg
atccagacaccaggcacgggcgtgccggagctggcctacatccagcccgatcacctgggt
acgccgcgtgtggtgatcgaccccatacgcgatgtcgtgatctgggaatggagcaacaag
agtgaagtgtttggcgaccaggcaccggccaatgaccccgatggtgatggcgtggtgttt
gacctggcgctgcgcttcccgggacagcaggcgacggatgcgagtgggttgttctacaac
taccagcgggaatatgacccggcggtggggcggtactcgcagagtgatccgattgggttg
gaggggggagtgtcgacctttatttacgctacaggcaactccgtcgaattcacggacccc
ttgggattgaataagcaagtcggggttgggggttcggcggggggggctggcccaggtgtg
gcagtgactggatcgataaacgtcggggtatcgattccaaaaaatttgggcaatgtttcc
tgctaccaaatctatggttcattgcagataagcggaatgcttggcgggggggcgtatcta
ggtgcaggtacatcaataagtgcctcggagagttctggcccgttgccagacagatcttgg
ggcgtttatcgatactctgaagtggccggcggctgggggccgtccattggcggctccgtt
caaggatccaccaacctgttggaaggaaataaggagggcgacaactgggcttggctgcgt
cgcctcttctcgttggaagatatggaaagagataagatgagtggtggatccatctccatc
ccaccgcttcctggtgttggatttggtgcaatgactggatccgggtatacgatctcaggg
cagatggctacgccaactggcaaagggtgcgggtgtccttga
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