Stenotrophomonas sp. MYb57: CLM74_21140
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Entry
CLM74_21140 CDS
T05384
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
stem
Stenotrophomonas sp. MYb57
Pathway
stem03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
stem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CLM74_21140 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stem03400
]
CLM74_21140 (recB)
Enzymes [BR:
stem01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
CLM74_21140 (recB)
DNA repair and recombination proteins [BR:
stem03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CLM74_21140 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_22
LolB
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AVJ35112
LinkDB
All DBs
Position
complement(4656140..4659814)
Genome browser
AA seq
1224 aa
AA seq
DB search
MSSGAEGASINTHCPDPYLALPLHGTRLIEASAGTGKTFTLATLFTRLVVEQGLRIGQIL
AVTFTDAATQELRKRIRERLALAARLVDLPPGDDETPDALLTRQVLQRHLQDGTETAKAL
KRRLQVAADEIDLAAIFTIHGFCTRVLREHALESGHTFDPPELLASDRELLEELAADLWR
VHANDPATLEPLTWLWSHPDALAADLRALLASPPLHPPLQPPAVDDPRPALQGTAAELSM
AVREHGERFFLDLCEAVDNKWINGVSYKLGWLHPLGRQLLGWAERGDAAELLSSDRLPVL
LPDALVAKTNKKFADRTPSSPLQAPLERYVALLAQREQWLRATALNFLHALREEATQRLS
VLKRVRRVQTYDDLIDGVARALEGPQRLALVKQLRAQYRIALVDEFQDTDDRQWGIFHTV
FGASPEVDELGLQPALFLIGDPKQAIYGFRGGDIHTYLKAKQVAEQAPALDQNFRSRPAV
LRALQALYDNAGEDAFLERDIRFEPVRPGGVRVDEDYLRDGRAAPALTLRLLRSDGEKAL
GADASRDAATQACVAAIHQILLEARAGTALLRGRPVQPGDIAVLVRSHREATLVQRALAA
VGIPAVAAGKQSLFATSEARDLRALLLALLQPADEGRLRTALATVLLGQRASAIASMERE
GDLQRGFQAQLLHWRERWQRGGPFAVVADVCAAQGERLLALIDGERRLTNYLQLGELLQE
ASAQALGMHGLLDWLQGQMANADQDDEQQLLRLESDARRVQIITLHKSKGLEYPLVFLPF
VGIDGGAPNTATHCTVHLQGERQLHWKLDRDDAWDAASSQREREQRAEDARLLYVGLTRA
EHALWIATGDLAGHAKTRLAPLLGDLQALRAHADVDLDDSAPPGRLPQLLAETEGELPAV
RALTRRVPHDWWVYSFTQLAHADAGNGDDIEAAATELPAPAADEPAGAELPLEPALPDAA
AEDTAPPDPRFMGSRFGNVLHDALENVDFALWSHWQPQQPAPEGQADVLRRSLHDEGYAD
EDLDDGVAVLVPLVGHTLTVPLPEGGALCSVPEHERRAEIEFHFAIEPTAVPVLLQLLHE
HGISSARRGFGLRRRLEGLMTGKIDLTYVRDGRWYVLDYKSNRLPGYSPDLLEIAMRHSE
YDLQALIYTVALHRWLRFRLGAAYDYARDMGGIRYLFCRGLDIAGNGVHVQRFAPELVDA
LDALFAGGQAAQAEMAARARGETA
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcggtgccgagggcgcttccatcaacacgcattgccccgacccttacctggcg
ttgccgctgcacggcacgcgactgatcgaagccagtgccggcaccggcaagacctttacc
ctggcgacgctgttcacccgtctggtggtcgagcagggcctgcgtatcggccagatcctg
gcggtgaccttcactgacgccgccacccaggaactgcgcaagcgcatccgcgagcgcctg
gccctggctgcgcgcttggtcgatctgccgccgggcgacgatgaaacacccgatgcgctg
ctgacccggcaggtgctgcaacgtcatctgcaggacggcacggaaaccgcaaaagcgttg
aagcggcgcctgcaggtagccgccgacgagatcgacctggctgcgatcttcaccatccac
ggcttctgcacccgcgtgctgcgcgaacatgcgctcgaaagcgggcataccttcgacccg
cccgagctgctggccagcgatcgcgagctgctggaagagctggcggccgatctctggcgt
gtgcatgccaacgacccggcaacgctggaaccgctgacctggttgtggtcccacccggat
gcgctggcggctgacctgcgcgcgctgctggcatcgccaccgctgcacccgccactgcag
ccgccggccgtggacgatccgcgcccggcgctgcagggcacggcggcggaactgtcgatg
gccgtgcgcgagcacggtgagcgcttcttcctggacctgtgcgaagcggtcgacaacaag
tggatcaacggcgtttcctacaagctgggctggctgcacccgctgggccggcagctgttg
ggctgggccgagcgcggcgacgcagccgaactgctgtccagcgaccgcttgccggtgctg
ctgcccgatgcgctggtggccaagaccaacaagaagttcgccgaccgcacaccgtcctcg
ccgctgcaggcaccgcttgagcgctacgtggcactgctggcccagcgcgaacaatggctg
cgtgccacggcactgaacttcctgcacgccctgcgcgaggaagccacccagcgcctgtcg
gtgctgaagcgcgtgcgccgcgtgcagacctacgacgatctgatcgacggcgtcgcccgc
gcgctggaaggcccgcagcggctggccctggtcaagcagctgcgggcgcagtaccgcatc
gccctggtcgatgaattccaggataccgatgaccgccagtggggcatcttccataccgtg
ttcggcgcctcgccggaggtggacgaactggggctgcagccggcgctgttcctgatcggt
gaccccaaacaggccatctatggcttccgtggcggcgacatccatacctacctgaaagcc
aagcaggtggccgagcaggcaccggcgctggaccagaacttccgctcgcgcccggccgtg
ctgcgcgcgctgcaggcgctgtacgacaacgctggcgaagatgccttcctcgaacgcgac
atccggttcgagccggtgcggcccggtggcgtgcgtgtcgatgaggactacctgcgcgat
ggccgggccgcaccggcgctgaccctgcgcctgctgcgcagcgacggtgaaaaggccctt
ggcgccgatgcgtcgcgcgacgcggcgacccaggcctgtgtggccgcgatccaccagatc
ctgctggaggcgcgtgccggcaccgcgctgctgcgtgggcgcccggtgcaacccggcgat
atcgccgtgctggtgcgctcgcatcgcgaagccacgctggtgcagcgtgcgctggccgca
gtcggcattcccgcggtggcggccggcaagcagagcctgtttgccaccagcgaggcccgt
gacctgcgtgcgttgctgctggcgttgctgcaaccggccgacgaagggcgactgcgtact
gcattggcaacggtgctgctggggcagcgcgcaagcgcgattgccagcatggagcgtgag
ggggacctgcagcgcgggttccaggcacagcttctgcactggcgcgagcgctggcagcgt
ggcggcccgttcgcggtggtggctgatgtctgcgccgcgcagggcgagcgcctgctggca
ctgatcgacggcgagcggcgcctgaccaattacctgcagctgggcgaactgctgcaggaa
gcctccgcgcaggcactgggcatgcacggcctgctggactggctgcaggggcagatggcc
aacgccgaccaggatgacgagcagcagctgctgcggctggagtccgacgcccgacgggtg
cagatcatcaccctgcacaagagcaaaggcctggaatacccgctggtgttcctgccgttc
gtgggcatcgatggcggcgcgccgaacaccgccacgcactgcaccgtgcacctgcagggt
gagcgccagctgcattggaagctggacagggacgatgcctgggacgcggccagcagccag
cgcgagcgcgaacagcgtgcagaagacgcgcgcctgctgtacgtgggcctgacccgcgcc
gagcatgccttgtggatcgccaccggcgatctggcaggccatgcgaagacccgcctggcg
ccgttgctgggcgacctgcaggcgctgcgagcgcacgcggacgtggacctggatgacagt
gcgccgccgggtcgcctgccgcagctgctggccgaaaccgaaggtgagctgcctgcggtg
cgtgccttgacccgccgtgtgccacatgactggtgggtctacagcttcacccagctggcg
catgccgacgctggcaacggcgacgatatcgaagcggcggccaccgaactgccggcaccg
gctgccgacgaacccgccggtgccgagctgccgctggaaccggcgctgccggacgctgcc
gcagaagacactgcgccgccggatccgcgcttcatgggcagccgcttcggcaatgtgctg
cacgatgcactggagaacgtcgacttcgcactgtggtcgcactggcagccgcagcaaccg
gcaccggagggacaggccgacgtgctgcgccgctcgctgcacgacgaaggctatgccgac
gaggatctggacgatggcgtggcggtgctggtgccgctggtcggccacaccctcaccgta
ccgctgcccgaaggcggtgcgctgtgcagcgtgcccgagcatgagcgccgggccgaaatc
gagttccacttcgccatcgagccgaccgcagtaccggtgctgctgcagctgctgcacgag
cacggcatctccagcgcgcggcgcggtttcggcctgcgcagaaggctggaaggcctgatg
accggcaagatcgatctgacctacgtgcgcgatggccgctggtatgtgctggactacaaa
tccaaccggctgccgggttacagcccggacctgctggagatcgcgatgcgtcacagcgag
tacgacctgcaggcgctgatctataccgtggccctgcatcgctggctgcgcttccgcctg
ggcgcggcatacgactacgcgcgcgacatgggcggtatccgctacctgttctgccggggc
ctggatattgccggcaatggcgtgcacgtgcagcgcttcgcgcctgagctggtggatgcg
ctggatgccttgtttgcgggcggccaagcagcccaggccgagatggcggcgcgcgcgcgc
ggagaaaccgcatga
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