Stenotrophomonas sp. WZN-1: CCR98_04060
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Entry
CCR98_04060 CDS
T04963
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sten
Stenotrophomonas sp. WZN-1
Pathway
sten03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sten00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CCR98_04060 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sten03021
]
CCR98_04060 (rpoB)
03400 DNA repair and recombination proteins [BR:
sten03400
]
CCR98_04060 (rpoB)
Enzymes [BR:
sten01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CCR98_04060 (rpoB)
Transcription machinery [BR:
sten03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CCR98_04060 (rpoB)
DNA repair and recombination proteins [BR:
sten03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CCR98_04060 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
PrmC_N
Motif
Other DBs
NCBI-ProteinID:
ARZ73384
UniProt:
A0A1Z2LGJ1
LinkDB
All DBs
Position
888046..892200
Genome browser
AA seq
1384 aa
AA seq
DB search
MTSYSFTEKKRIRKDFGKQRSILEVPFLLAIQVDSYREFLQENVDPAKRTDHGLHAALKS
VFPIASYSGNAALEYVGYKLGEPVFDERECRQRGMSYGAPLRVTVRLVIYDRESSTKAIK
YVKEQEVYLGEIPLMTENGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSAR
IIPYRGSWLDFEFDPKDALFTRIDRRRKLPVSILLRALGYSNEEMLAEFFEINTFHINPD
EGVQLELVPERLRGETLGFDLADGDKVIVEAGKRITARHIKQLEASGIAALAVPDDYIVG
RILSHDVVDASTGELLAQANDEISDEQLQAFRKAGVDAVGTLWVNDLDRGPYLSNTLRID
PTKTQLEALVEIYRMMRPGEPPTKDAAQNLFHNLFFTFERYDLSAVGRMKFNRRVGRKET
TGEAVLYDSKYFGERNDEESKRLVAAHGDSSDILDVIKVLTEIRNGRGVVDDIDHLGNRR
VRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQLS
QFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIGLI
NSLAVYARTNQYGFLETPYRKVVDGKVYDEVEFLSAIEENEYVIAQANALTNADSVLTEQ
FVPCRFQGESLLKPPAEVHFMDVSPMQTVSIAAALVPFLEHDDANRALMGANMQRQAVPT
LRSQKPLVGTGIERAVARDSGVTVNARRGGEIVQIDAARIVVKVNEEEIVGATDAGVDIY
NLVKYTRSNQNTCINQRPLVQVGDVIARGDVLADGPSTDIGELALGQNMLIAFMPWNGYN
FEDSILLSERVVEEDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLDESGVV
YIGAEVRAGDIMVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVIDV
QVFTRDGIEKDKRARQIEESEIKRVKKDFDDQFRILEAAIYMRLRSQIVGKVVNGGAGLK
KGDVITDAFLDGLKKADWFALRMKDEDASEAIERAQKQIQAHEKEFERRFADKRGKITAG
DDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSNVVPVEDMPYMASGETVDIVLN
PLGVPSRMNIGQILEVHLGWAAKGLGRKIQAMMEAQAAVADLRKFLDDIYNHDDTNVANR
VDLSQFSDEELLRLARNLTDGVPMATPVFDGATEAEIKRMLELADLPSSGQTQLYDGRTG
EAFDRHTTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL
EAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEHEMVAGMPESFNVLVKEIRSLAINME
LEDN
NT seq
4155 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcctattcgttcaccgaaaaaaagcgtatccgcaaggatttcggcaagcagcgc
tcgattctcgaagtgccgttcctgctcgccatccaggtggattcctatcgtgaattcctg
caggaaaacgtcgatccggccaagcgcacggaccacggcctgcacgctgcgctgaagtcg
gtcttcccgatcgccagctacagcggcaacgctgccctggaatacgtcggctacaagctg
ggcgaaccggtcttcgacgagcgtgagtgccgccagcgtggcatgagctacggcgcgccg
ctgcgcgtgaccgtgcgcctggtgatctacgaccgtgagtcgtcgaccaaggccatcaag
tatgtgaaggagcaggaggtctatctgggcgaaatcccgctgatgaccgaaaacggcacc
ttcatcgtcaacggcaccgagcgcgtcatcgtctcgcagctgcaccgctcgccgggcgtg
ttcttcgaccacgatcgtggcaagacccacagctcgggcaagctgctgtacagcgcccgc
attattccttaccgcggttcctggctggacttcgagttcgacccgaaggacgcgctgttc
acccgtatcgaccgtcgccgcaagttgccggtgtcgatcctgctgcgcgcgcttggctac
agcaacgaagagatgctggccgagttcttcgagatcaacaccttccacatcaacccggat
gaaggcgtccagctggagctggtgccggagcgcctgcgtggcgaaaccctgggcttcgac
ctcgccgacggcgacaaggtcatcgtggaagccggcaagcgcatcaccgcgcgccacatc
aagcagctggaagcctcgggcatcgccgctctggccgtgccggacgactacatcgtcggc
cgcatcctgtcgcacgacgtggtcgacgcctcgaccggcgaactgctggcgcaggccaac
gacgagatcagcgacgagcagctgcaggccttccgcaaggccggtgtggatgccgtgggc
accctgtgggtgaacgacctggatcgtggcccgtacctgtccaacactctgcgcatcgat
ccgaccaagacccagctggaagccctggtcgagatctatcgcatgatgcgtccgggtgag
ccgccgaccaaggatgccgcgcagaacctgttccacaacctgttcttcaccttcgagcgt
tacgacctgtccgcggtcggccgcatgaagttcaaccgtcgcgtgggccgcaaggaaacc
accggcgaagccgtgctgtacgacagcaagtacttcggtgagcgcaacgacgaagagtcc
aagcgcctggtcgctgcccacggcgacagctccgacatcctggacgtgatcaaggtcctg
accgagatccgcaacggtcgcggcgtggtcgatgacatcgatcacctgggcaaccgtcgc
gtgcgttcggtcggcgaaatggccgagaacgtgttccgcgtcggcctggtccgcgtcgag
cgcgcggtcaaggagcgcctgtcgatggccgagtcggaaggcctgaccccgcaggaactg
atcaacgccaagccggtcgccgctgccatcaaggagttcttcggctcctcgcagctgtcg
cagttcatggaccagaacaacccgctgtcggaagtgacgcacaagcgtcgcgtctcggcc
ctgggcccgggcggtctgacccgtgagcgtgccggcttcgaagtgcgcgacgtgcacccg
acccattacggccgcgtctgcaccatcgaaactccggaaggccctaacatcggcctgatc
aactcgctggccgtgtacgcccgcaccaaccagtacggtttcctcgagaccccgtaccgc
aaggtcgtggacggcaaggtctatgacgaagtcgagttcctgtcggcgatcgaagaaaac
gagtacgtcattgcacaggccaacgccctgaccaatgccgacagcgtgctgaccgagcag
ttcgttccttgccgcttccagggcgaatcgctgctgaagccgccggcggaagtccacttc
atggacgtctcgccgatgcagaccgtgtcgatcgcggccgcgctggttccgttcctggag
cacgatgacgccaaccgcgcgctgatgggcgccaacatgcagcgtcaggccgtgccgacc
ctgcgctcgcagaagccgctggtcggtaccggcatcgagcgcgccgtggcgcgtgactcc
ggtgtgaccgtgaacgcccgtcgtggtggcgagatcgtgcagatcgacgcggcccgcatc
gtggtcaaggtcaacgaggaagagatcgttggcgccaccgacgcaggcgtggacatctac
aacctggtcaagtacacccgttcgaaccagaacacctgcatcaaccagcgtccgctggtc
caggtgggtgacgtcatcgcccgcggcgacgtgctggccgacggtccgtccaccgacatc
ggcgaactggcgctgggccagaacatgctgatcgcgttcatgccgtggaacggctacaac
ttcgaagactccatcctgctctccgagcgcgtggtggaagaggatcgttacaccacgatc
cacatcgaagagctgacctgcgtcgcgcgtgacaccaagctggggccggaggaaatctcc
gccgacatcccgaacgtctccgagcaggcgctgaaccgcctggacgagagcggcgtggtg
tacatcggtgcggaagtccgcgccggcgacatcatggtcggcaaggtcaccccgaagggc
gaaagccagctgaccccggaagagaagctgctgcgcgcgatcttcggcgagaaggcttcg
gacgttaaggacagctcgctgcgcgttccgccgggcatggacggcaccgtcatcgacgtg
caggtcttcacccgcgacggcatcgagaaggacaagcgcgcccgccagatcgaagagtct
gaaatcaagcgcgtcaagaaggacttcgacgaccagttccgcatcctggaagccgccatc
tacatgcgtctgcgttcgcagatcgtgggcaaggtggtcaacggtggcgctggcctgaag
aagggtgacgtgatcaccgacgccttcctcgacggcctgaagaaggctgactggttcgcc
ctgcgcatgaaggacgaggacgcctcggaagccatcgagcgtgcccagaagcagatccag
gcgcacgagaaggaattcgagcgtcgcttcgccgacaagcgcggcaagatcaccgcgggc
gacgacctcgccccgggcgtgctgaagatggtcaaggtgttcctggccgtgaagcgccgc
atccagccgggcgacaagatggcaggccgccacggcaacaagggtgtggtgtccaacgtg
gtgccggtcgaggacatgccgtacatggcctcgggcgaaaccgttgacatcgtgctgaac
ccgctgggcgtgccgtcgcgtatgaacatcggccagatcctggaagtgcacctgggctgg
gccgccaagggtctgggtcgcaagatccaggcgatgatggaagcccaggcggcggtcgcc
gacctgcgcaagttcctggacgacatctacaaccacgacgacaccaacgtggccaaccgt
gtcgacctgtcgcagttcagcgacgaggaactgctgcgcctggcccgcaacctgaccgac
ggcgtgccgatggccaccccggtgttcgacggcgccaccgaagcggaaatcaagcgcatg
ctggaactggccgacctgccgagcagtggccagacccagctgtacgacggccgcaccggt
gaagccttcgatcgccacaccaccgttggctacatgcactacctgaagctgaaccacctg
gtcgacgacaagatgcacgcccgttcgaccggtccgtactcgctcgtcacccagcagccg
ctgggcggcaaggcgcagttcggcggccagcgcttcggtgaaatggaagtctgggcgctg
gaagcctacggcgcggcctacaccctgcaggaaatgctgacggtgaagtccgatgacgtg
cagggccgcaaccagatgtacaagaacatcgtcgacggtgagcacgagatggtcgcgggc
atgccggaatccttcaacgtgctcgtgaaggaaatccgctcgctggccatcaacatggaa
ctggaagacaactga
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integrated database retrieval system
