Stenotrophomonas sp. WZN-1: CCR98_04065
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Entry
CCR98_04065 CDS
T04963
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sten
Stenotrophomonas sp. WZN-1
Pathway
sten03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sten00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CCR98_04065 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sten03021
]
CCR98_04065 (rpoC)
03400 DNA repair and recombination proteins [BR:
sten03400
]
CCR98_04065 (rpoC)
Enzymes [BR:
sten01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CCR98_04065 (rpoC)
Transcription machinery [BR:
sten03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CCR98_04065 (rpoC)
DNA repair and recombination proteins [BR:
sten03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CCR98_04065 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ARZ73385
LinkDB
All DBs
Position
892288..896511
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLNLFNQQRQTLDFDAIKIALASPDLIRSWSFGEVKKPETINYRTFKPERDGLFCAA
IFGPVKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFEAYVVTEPGLTALERRQLLTEEQYLQARQEHGDDFDAAM
GAEAVYELLRTIDLQSEMTRLREEIAATGSETKLKRLTKRIKLIEAFLESGNRPEWMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELSAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPY
LRLHQCGLPKKMALELFKPFVFAKLQRRGLATTIKAAKKLVEREEAEVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRSLENKKGEGMAFANIAEVKRAYDNR
VVELHARVKVRITEVVTDEDGNKQNKTSIVDTTIGRALLAEILPEGLPFALANTELTKKN
ISRLINSSYRQLGLKDTVVFADKLMYTGFAYATRAGVSIGIDDMLIPDEKKGILTEAEAE
VLEIQEQYQSGLVTAGERYNKVVDIWSRTNERIAKAMMDTIGTEKVVNAKGETIDQKSMN
SLYIMADSGARGSQAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVQEYFNSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITEVDCGTTEGLIMTPIVEGGDVVEPLKDRVL
GRVVAEDVFLPGNDEDPIVTRNTLLDEAWVAKLEDAGVQTIKVRSTISCESAFGVCSRCY
GRDLARGHLVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNITVKTTGSVK
FSNLKSVEHANGSLVAVSRSGEISVLDAHGRERERYKLPYGATITSKDGDAIKAGQTVAN
WDPHNHPIVSEVAGFIRFIDFVDGITVIEKTDELTGLASREITDPKRRGTQAKDLRPIVR
IVDAKGNDLSIPGTDLPAQYLLPPRSIVNLQDGAPVGVGDVVAKIPQEASKTRDITGGLP
RVADLFEARKPKDPAVLAERSGIISFGKDTKGKQRLIIKDTDGSEHEELIPKYRQVIVFE
GEHVTKGETIVDGEPSPQDILRLLGVEPLAAYLVKEIQDVYRLQGVKINDKHIEVITRQM
LRKVEITDQGSSKFLNGEQVERQRVIEENARLSTRNELPARFDPVLLGITKASLATESFI
SAASFQETTRVLTEAAVRGTKDNLRGLKENVIVGRLIPAGTGLSYHSNRRRGASGLTDSE
MQTLAGTPVAVEAPVVEAEAEQASGEE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacctgctcaacctcttcaaccagcagcgccagacgctggacttcgacgcgatc
aagatcgcgctggcctcgccggacctgatccgttcgtggtccttcggcgaagtgaagaag
ccggaaaccatcaactaccgtaccttcaagccggaacgcgacggcctgttctgcgccgcc
atcttcggcccggtgaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagcac
cgcggcgtggtctgcgaaaagtgcggcaccgaagtgaccctggccaaggtgcgtcgcgag
cgcatgggccacatcgacctggcttcgccggtcgcgcacatctggttcctgaagtcgctg
ccgtcgcgcatcggcctgatgctggacatgaccctgcgtgacatcgagcgcgtgctgtac
ttcgaagcgtacgtggtgaccgagccgggcctgaccgccctggagcgccgccagctgctg
accgaagaacagtacctgcaggctcgccaggagcacggtgacgacttcgacgccgccatg
ggcgccgaggccgtgtacgaactgctgcgcacgatcgacctgcagtcggaaatgacccgc
ctgcgcgaggaaatcgccgctaccggttcggaaaccaagctcaagcgcctcaccaagcgc
atcaagctgatcgaagccttcctggagtcgggcaaccgtccggaatggatggtcatgacc
gtgctgccggtgctgccgccggacctgcgtccgctggttccgctggatggcggccgcttc
gcgacctccgacctgaacgatctgtaccgccgcgtcatcaaccgcaacaaccgcctgcgc
cgcctgctcgaactgagcgcgccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaatcggtcgatgcgctgctggacaacggccgtcgtggccgtgccatcaccggcaccaac
aagcgcccgctgaagtcgctggccgacatgatcaagggcaagcagggtcgcttccgccag
aacctgctcggcaagcgcgtcgactactcgggccgttcggtcatcgtggtcggtccgtac
ctgcgcctgcaccagtgcggcctgccgaagaagatggcgcttgagctgttcaagccgttc
gtcttcgccaagctgcagcgtcgtggcctggccaccaccatcaaggccgccaagaagctg
gtcgagcgcgaagaagccgaagtctgggacatcctggaagaggtcatccgcgagcatccg
gtgatgctgaaccgtgcgccgaccctgcaccgcctgggcatccaggcgttcgagccggtg
ctgatcgaaggcaaggccatccagctgcacccgctggtctgcaccgcgttcaacgccgac
ttcgacggtgaccagatggccgtccacgtgccgctctcgctggaagcccagctggaagcg
cgtgcgctgatgatgtcgaccaacaacatcctgtcgccggccaacggcgagccgatcatc
gtgccgtcgcaggacgttgtgctgggtctgtactacatgacccgctcgctggaaaacaag
aagggcgagggcatggccttcgccaacatcgccgaagtcaagcgcgcctacgacaaccgc
gtggtggaactgcacgcgcgcgtcaaggtccgcatcaccgaagtggtgaccgacgaagac
ggcaacaagcagaacaagacctcgatcgtggacaccacgatcggtcgtgccctgctggct
gaaatcctgccggaaggcctgccgttcgcgctggccaacaccgagctgaccaagaagaac
atcagccgcctgatcaactccagctaccgccagctgggtctgaaggacacggtcgtgttc
gccgacaagctgatgtacaccggcttcgcctacgcgacccgcgccggcgtctcgatcggc
atcgacgacatgctgatcccggacgagaagaagggcatcctcaccgaggccgaagccgaa
gtgctggaaatccaggagcagtaccagtcgggcctggtcaccgccggcgagcgctacaac
aaggtggtcgacatctggtcgcgcaccaacgagcgcatcgccaaggcgatgatggacacc
atcggtaccgagaaggtggtcaatgccaagggtgagaccatcgaccagaagtcgatgaac
tcgctgtacatcatggccgactccggcgcgcgtggttcgcaggcgcagatccgtcagctg
gccggcatgcgtggcctgatggcccgcccggacggctcgatcatcgagacgcccatcaag
gcgaacttccgcgaaggcctgaacgtgcaggagtacttcaactccacccacggtgcccgt
aagggtctggccgataccgcgctgaagaccgcgaactcgggttacctgacccgtcgcctg
gtcgacgtcgcgcaggacgtggtgatcaccgaggtggattgcggtaccaccgaaggcctg
atcatgaccccgatcgtggaaggcggcgacgtggtcgagccgctgaaggaccgcgtgctg
ggtcgcgtggttgccgaggacgtgttcctgccgggcaacgacgaagatccgatcgtcacc
cgcaacaccctgctggacgaagcctgggtcgccaagctggaagatgccggcgtgcagacc
atcaaggtccgctcgaccatctcctgcgaatcggccttcggtgtctgctcgcgctgctac
ggccgcgatctggcccgtggccacctggtcaacatcggtgaagcggtcggcgtcatcgcc
gcccagtccatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggtggt
gcggcgtcgcgagctgctgcggtcgacaacatcaccgtcaagaccaccggctcggtcaag
ttcagcaacctcaagtccgtcgagcacgccaacggctcgctggtggcggtgtcgcgctcg
ggcgaaatctcggtgctcgatgcgcacggccgtgagcgtgagcgttacaagctgccgtac
ggtgcgaccatcacgtccaaggacggtgatgcgatcaaggctggccagaccgtggccaac
tgggatccgcataaccacccgatcgtgtcggaagtggccggcttcatccgcttcatcgac
ttcgtcgacggcatcaccgtcatcgagaagaccgatgagctgaccggcctggcgtcgcgc
gaaatcaccgatccgaagcgtcgtggtacccaggccaaggacctgcgcccgatcgtgcgc
atcgtcgacgccaagggcaacgacctgtcgatcccgggcaccgacctgccggcgcagtac
ctgctgccgccgcgttcgatcgtcaacctgcaggacggtgccccggtgggcgtgggcgac
gtcgtcgccaagatcccgcaggaagcgtcgaagacccgcgacatcaccggtggtctgccg
cgcgtggccgacctgttcgaagcgcgcaagccgaaggatccggcggtgctggccgagcgt
tcgggcatcatcagcttcggcaaggacaccaagggcaagcagcgcctgatcatcaaggac
accgatggttcggagcacgaagagctgatcccgaagtaccgtcaggtcatcgtgttcgaa
ggcgagcatgtcaccaagggtgaaaccatcgtggacggcgagccgagcccgcaggacatc
ctgcgcctgctgggtgtcgagccgctggctgcctacctggtcaaggaaatccaggacgtg
taccgcctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcacccgccagatg
ctgcgcaaggtcgagatcaccgaccagggcagcagcaagttcctgaacggcgaacaggtg
gagcgtcagcgcgttatcgaggagaatgcgcgcctgtcgacccgcaacgaactgccggcg
cgcttcgatccggtcctgctgggtatcaccaaggcctcgctggcgaccgaatcgttcatc
tcggcggcctccttccaggagaccacccgcgtgctgaccgaggctgccgtccgcggtacc
aaggacaacctgcgtggcctgaaggaaaacgtcatcgtcggccgcctgattccggccggt
accggcctgtcctaccacagcaaccgccgtcgcggcgcttccggtctcaccgactcggaa
atgcagaccctggccggcaccccggttgcggtcgaggcaccggtggttgaagccgaagct
gaacaggcctcgggcgaagaatga
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integrated database retrieval system
