Stenotrophomonas sp. WZN-1: CCR98_06520
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Entry
CCR98_06520 CDS
T04963
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sten
Stenotrophomonas sp. WZN-1
Pathway
sten03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sten00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CCR98_06520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sten03019
]
CCR98_06520
03009 Ribosome biogenesis [BR:
sten03009
]
CCR98_06520
Enzymes [BR:
sten01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CCR98_06520
Messenger RNA biogenesis [BR:
sten03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CCR98_06520
Ribosome biogenesis [BR:
sten03009
]
Prokaryotic type
rRNA helicases
CCR98_06520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
ARZ73841
LinkDB
All DBs
Position
1402220..1404166
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AA seq
648 aa
AA seq
DB search
MSQDSQAPLQFAQLGLSEPVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKT
AAFALPVLSNIDLQQIKPQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQ
QLSALRRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKL
PEQRQVALFSATMPPQIRRIAQTYLQDPVEVTIAAKTTTSANIRQRYWWVSGMHKLDALT
RILEVEPFDAMIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKLD
ILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFATPREKGML
RQIERATRQPIEEMQLPSVEAVNDTRINKFTSRISETLGAGGLDFYRQLLERFENEQNVP
AIEVAAALAKMLQGDTPFLLQPPVRAPREERAPRERFDRGDRPERGDRFDRNERGPRFER
GPRRDDAEGGFEQRPRREVPPRGAPEQGMETYRISVGHQHGVKPANIVGAIANEAGLESR
FIGRIDIHDDFSLLDLPAQMPPDVLSHLQKVWVSGQQLQMRALAPGEDTNPAPRPFKPRF
DKRGPGGPGGPRRGGPGGPGGHGGDRGGDRDSRPPRRDGFKPRGPRSY
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaagattcccaagcgccgctgcagtttgcgcagctcggcctgtccgagcccgtg
atgcaggcggtcaccgccatcggctacgaaaccccgtcgccgatccaggccgccaccatc
ccggcgatgctggaaggccgcgatgtgctgggccaggcccagaccggtaccggcaagacc
gctgcctttgcactgccggtactgtccaacatcgacctgcagcagatcaagccccaggcc
ctgatcctggcgccgacccgcgaactggccatccaggtcgccgaggcgttccagtcctat
tcgtcgaagatcccaggcttccgcgtgctgccggtgtacggcggccagccgtacggccag
cagctgtcggcgctgcgtcgtggcgtgcatatcgtggttggtacccccggccgcgtgatc
gaccacctggaccgcagcaccctggacctgtccgagctgaagacgctggtgctggacgaa
gccgatgaaatgctgcgcatgggcttcatcgacgacgtcgaagccgtgctgaagaagctg
ccggagcagcgccaggtggccctgttctcggccaccatgccgccgcagatccgccgcatc
gcgcagacctacctgcaggacccggtggaagtgaccatcgcggccaagaccaccacctcg
gccaatatccgccagcgctactggtgggtgagcggcatgcacaagctggacgcgctgacc
cgcatcctggaagtcgagccgttcgacgcgatgatcatcttcgcgcgcaccaaggctggc
accgaggaactggccagcaagctgcaggcccgtggcctggccgctgccgccatcaacggt
gacatgcagcaggcccagcgtgagcgcaccatcgccatgctgaaggaaggcaagctggac
atcctggtcgccaccgatgtggccgcccgtggcctggacgtggagcgcatcagccacgtg
ctgaactacgacattccgtacgacaccgaaagctacgtgcaccgcatcggccgtaccggc
cgtgccggccgcagcggcgaggcgatcctgttcgccaccccgcgtgagaagggcatgctg
cgccagatcgagcgcgccacccgccagccgatcgaagagatgcagctgccgagcgtggaa
gcggtcaacgacacccgcatcaacaagttcacctcgcgcatcagcgaaaccctcggtgcc
ggcggcctggatttctaccgccagctgctggagcgtttcgagaacgagcagaacgtgccg
gccatcgaagtggccgccgcgctggcgaagatgctgcagggtgacaccccgttcctgctg
cagccgccggtgcgtgccccgcgtgaagagcgtgcgccgcgcgaacgcttcgaccgtggt
gaccgcccggagcgcggcgatcgcttcgaccgcaacgagcgtggtccgcgtttcgagcgt
ggcccgcgccgtgacgacgccgaaggtggtttcgagcagcgtccgcgccgcgaggttccg
ccgcgtggtgcgccggagcagggcatggagacctaccgcatttcggtcggccaccagcac
ggcgtgaagccggccaacatcgtcggcgccatcgccaacgaagccggcctggaaagccgc
ttcatcggccgcatcgacattcacgatgacttctcgctgctggacctgccggcgcagatg
ccgccggacgtgctgtcgcacctgcagaaggtctgggtgtcgggccagcagctgcagatg
cgtgcgctggctccgggtgaagacaccaacccggccccgcgtccgttcaagccgcgcttc
gacaagcgtggtccgggcggcccgggtggcccgcgtcgcggtggcccgggcggtccgggt
ggccatggtggcgaccgcggcggtgaccgcgacagccgtccgccgcgccgtgacggcttc
aagccgcgcggcccgcgcagctactga
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