Stenotrophomonas sp. WZN-1: CCR98_06660
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Entry
CCR98_06660 CDS
T04963
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sten
Stenotrophomonas sp. WZN-1
Pathway
sten03030
DNA replication
sten03430
Mismatch repair
sten03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sten00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CCR98_06660
03430 Mismatch repair
CCR98_06660
03440 Homologous recombination
CCR98_06660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sten03032
]
CCR98_06660
03400 DNA repair and recombination proteins [BR:
sten03400
]
CCR98_06660
Enzymes [BR:
sten01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CCR98_06660
DNA replication proteins [BR:
sten03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CCR98_06660
DNA repair and recombination proteins [BR:
sten03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CCR98_06660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
ARZ73867
LinkDB
All DBs
Position
complement(1433643..1437233)
Genome browser
AA seq
1196 aa
AA seq
DB search
MSNSRFVHLHVHTEFSLADSTIRVPAKPDQADPKKAKQANLLSRSVELGLPALAVTDLNN
LFALVKFYKAAEGVGIKPIAGADVLIAEEGQDPWRMTLLCRDREGYLSLSRLLTRAWMEG
HRPEGGVAVHPDWLKAGNANLFALAGRQSLAGRLALDGKHELAEQQLADWQRVFGDGLHL
ELTRTGREGEETFNQFALMAAGQRGLPVVASNDVRFLSPSDFSAHEARVCISTGRVLDDP
KRPREYSDQQYLKSAEEMCALFADIPDAIDNTLALAERCNIEMRLGTYFLPNYPVPDDET
LDTWIQKMSRDGLEERLEKNPLAPGKTREEYFERLEFELNTIIKMGFPGYFLIVADFIQW
GKNQGIPIGPGRGSGAGSLVAWALKITDLDPLPYNLLFERFLNPERVSMPDFDIDFCMDR
RDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDSGRVLGFPYGLVDGVSKLIPNILGIH
LKDALGKGKEGPSSEMASAELIQRYETEDDVRDLIDLALQLEDLTRNAGKHAGGVVIGPE
PLSEFCPLYAEHDENGLGKNPVTQFDKNDVEEVGLVKFDFLGLRTLTIIDWAVKAINKRH
ERAGIPPVDIAAIPLDDTPTYKDIFANGNTGAVFQFESSGMRRLLKDARPDRFEDLIALV
SLYRPGPMDLIPSFNARKHGQEEIIYPDPRTEAILKDTYGIMVYQEQVMQMAQIVGGYSL
GGADLLRRAMGKKVPAEMAKHREIFREGAARDGVDEAKADAIFDLMEKFAGYGFNKSHAA
AYALVSYQTAWLKRHYPAEFMAATLSSDLDNTDKVVGFLDEVRNLGLTVLPPKVNQSAFM
FEAVTPDTIQYGLGAIKGVGQGACEAVVEERLKGGEYKDLLDFCTRVGSAKLNRRTLEAM
INCGALDELGHNRASLMLQLPEVIKATDQMARERASGQNSLFGGPDPSAATIQLDLPEAE
EWPLLQRLNGERDTLGFYLSGHPFDPWRDDVRDLVGNDLGSVEKIWSANSGGGGGGEKRW
RPEVQTVLAGQVVGVRRKGESQIFIQLEDGRGRVECSAFSDAMAEFGHLMTKDRILVVKG
GLREDEFNGGFALRIRQCWDFDEVCANYATRLSLRLDLRQQRPVWERIDALLDRHRPGRT
PLRLDLLLKGPHGGVAGMLDVSGQSAVRIDSKLMEALRADPAVRTLKVRYSPPWAS
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atgtccaactcccgcttcgtacatctccacgtccacaccgagttctcgctggcggactcg
accatccgcgtgccggccaagcccgaccaggcggacccgaagaaagccaagcaggccaac
ctgctgtcgcgctcggtcgaactcggcctgcccgcgctggcggtaaccgacctcaacaac
ctgttcgccctggtcaagttctacaaggcggccgaaggcgtgggcatcaagccgatcgcc
ggcgctgacgtgctgatcgccgaggaaggccaggacccgtggcggatgaccctgctgtgc
cgtgatcgcgagggctacctgagcctgtcgcggctgctgacccgcgcctggatggaaggc
catcgcccggagggtggcgtggcggtgcacccggactggctgaaggctggcaacgccaac
ctgttcgcgctggccggccggcagagcctggccgggcggctggcgctggacggcaagcat
gaactggccgagcagcagctggccgactggcagcgcgtgttcggcgatggcctgcacctg
gagctgacccgcaccggccgcgagggcgaagaaaccttcaaccagttcgcgctgatggcc
gccggccagcgtggcctgccggtggtggccagcaacgacgtgcgcttcctgtcgccatcg
gacttcagcgcgcacgaagcgcgcgtgtgcatttccaccggccgcgtgctggacgacccc
aagcgcccgcgcgaatacagcgaccagcagtacctgaagtcggccgaggagatgtgcgcg
ctgttcgccgacatccccgatgcaatcgacaacacgctggcgctggccgagcgctgcaac
atcgaaatgcggcttggcacctacttcctgcccaactacccggtgcccgacgacgaaacc
ctggacacctggatccagaagatgtcgcgcgacggcctggaagagcgcctggagaagaat
ccgctggcgccgggcaagacccgcgaagagtacttcgagcgcctggaattcgagctcaac
accatcatcaagatgggcttcccgggctacttcctgatcgtggccgacttcatccagtgg
ggcaagaaccagggcattccgatcggccccggccgtggttcgggtgccggttcgctggtg
gcgtgggcgctgaagatcaccgatctggacccgctgccgtacaacctgctgttcgagcga
ttcctcaacccggaacgcgtgtcgatgcccgacttcgacatcgacttctgcatggaccgc
cgcgacgaggtgatcgactacgtcgcacgcaagtacgggcgcgagcgcgtcagccagatc
atcacctacggcaccatggccgccaaggcggtggtgcgcgactccggccgcgtactcggt
ttcccgtacggcctggtcgacggtgtctccaagctgatcccgaacatcctcggcatccac
ctgaaggatgcgctgggcaagggcaaggaaggcccgagctcggaaatggcctcggctgaa
ctgatccagcgctacgagaccgaggacgatgtccgcgacctgatcgatctggcgctgcag
ctggaagacctgacccgcaacgccggcaagcatgccggtggcgtggtgatcgggccagag
ccgctgagcgagttctgcccgctgtacgccgaacacgacgagaacggcctcggcaagaac
ccggtcacccagttcgacaagaacgacgtggaagaagtgggcctggtgaagttcgacttc
ctcggcctgcgcacgctgaccatcatcgactgggcggtgaaggcgatcaacaagcgccac
gagcgcgccggcatcccgccggtggacatcgccgcgatcccgctggacgacacgcccacc
tacaaggacatcttcgccaacggcaacaccggcgcggtgttccagttcgaatcctcgggc
atgcgccgcctgctgaaggacgcgcgccccgaccgtttcgaagacctgatcgcgctggtg
tcgctgtaccgccccggcccgatggacctgattccctccttcaacgcgcgcaagcacggc
caggaagaaatcatctatcccgatccgcgcaccgaagccatcctgaaggacacctacggc
atcatggtgtaccaggagcaggtgatgcagatggcgcagatcgtcggcggctactcgctg
ggcggcgccgacctgctgcgccgcgcgatgggcaagaaggtgccggccgaaatggccaag
caccgcgagatcttccgcgaaggcgcggccagggacggcgtggacgaggccaaggccgat
gcgatcttcgacctgatggagaagttcgccggctacggcttcaacaagtcgcacgccgct
gcctacgcactggtcagctaccagaccgcgtggctgaagcgccactacccggccgagttc
atggcagccacgctgtcctcggacctggacaacaccgacaaggtggtcggcttcctcgac
gaggtgcgcaacctcggcctgactgtgctgccaccgaaggtgaaccagtcggccttcatg
ttcgaggcggtgacgcctgacaccatccagtacggactgggcgcgatcaagggcgtcggc
cagggtgcctgcgaagcggtggtggaagagcgcctgaagggcggcgagtacaaggacctg
ctcgacttctgtacccgcgtcggttcggccaagctcaaccggcgcacgctggaagcaatg
atcaactgcggcgcactggatgagctcggccacaaccgcgcctcgctgatgctgcagctg
ccggaggtgatcaaggcgaccgaccagatggcgcgcgaacgtgcgtccgggcagaactcg
ctgttcggcggccctgacccgagcgcggccacgatccagctggacctgcccgaagccgag
gaatggccgttgctgcagcgcctgaacggcgagcgcgacacgctcggcttctacctcagc
ggccacccgttcgatccctggcgcgacgacgtgcgcgacctggtcggcaacgacctgggt
tcggtggagaagatctggagcgccaacagtggcggcggtggcggcggcgagaagcgctgg
cgcccggaagtacagaccgtgctggccggacaggtggtcggcgtgcgccgcaagggcgag
agccagatcttcattcagctcgaagacggccgcggccgcgtcgagtgcagcgcgttctcc
gacgcgatggccgagttcggccacctgatgaccaaggaccgcatcctggtggtcaagggt
ggcctgcgcgaggacgagttcaacggcggcttcgcgctgcgcatccgccagtgctgggac
ttcgacgaagtctgcgccaactacgccacgcggctgtcgctgcgcctggacctgcgccag
cagcgcccggtctgggaacgcattgatgcgctgctcgaccgccatcgccccggccgcacg
ccgctgcgcctggacctgctgctgaagggcccgcacggcggcgtcgccggcatgctcgat
gtctccgggcagagcgcggtgcgcatcgattccaagctgatggaggcgctgcgcgcggac
cctgccgtgcgcacgctgaaggtgcgctacagcccgccgtgggccagctga
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