Stenotrophomonas sp. WZN-1: CCR98_07335
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Entry
CCR98_07335 CDS
T04963
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
sten
Stenotrophomonas sp. WZN-1
Pathway
sten03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sten00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CCR98_07335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sten03400
]
CCR98_07335
DNA repair and recombination proteins [BR:
sten03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CCR98_07335
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CCR98_07335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
UB2H
AAA_30
AIP3
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ARZ73994
LinkDB
All DBs
Position
1586512..1588536
Genome browser
AA seq
674 aa
AA seq
DB search
MSDSFELVSPYSPAGDQPDAIAKLTSNFEAGIAKQTLLGVTGSGKTYTIANVIQNVQKPT
LIMAPNKTLAAQLYGEFKAFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIE
QMRLAATKTLLSRPDAIVVATVSAIYGLGAPEDYLSLRLILSRGERIDQRDLINHLTQLQ
YTRNEYELQRGTFRVRGEVIDVFPAESDSEALRLELFDGEVEKITLFDPLTGETLRNMQR
FTVYPKTHYATTRERVLAAIETIKVELKERLEQLYAQNKLVEAQRLAQRTQFDLEMMAEV
GYCNGIENYSRHLTGKNAGEPPPTLFDYLPADALLVIDESHVTIPQIGAMFKGDRSRKET
LVEFGFRLPSALDNRPLRFEEWEERCPRSIYVSATPGPYEYREAGDEITELVVRPTGLID
PVVEIRPVGTQVDDLMSEANERIKAGDRVLVTTLTKRMAENLTEYLTEHGIRVRYLHSDV
DTVERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIG
RAARNVRGKAILYADRITRSMQAAIDETDRRRAKQVEYNAEHGIVPRSVARPIVDVLEGA
RSDAAEKEAKKGKGKGRAGVAEEAADYRSLSPAQLGVRLKALEQQMYQHAKDLEFEDAAR
VRDQIRQLKEASLG
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacagttttgaacttgtctcgccgtactcgccggcgggcgaccagcccgatgcc
atcgcgaagctgaccagcaacttcgaggccggcatcgccaagcagaccctgctcggcgtg
accggctcgggcaagacctacaccatcgccaacgtcatccagaacgtgcagaagccgacg
ctgatcatggcgccgaacaagacgctggcggcgcagctgtatggcgagttcaaggcgttc
ttcccgcacaacgcggtggagtatttcgtcagctactacgactactaccagccggaagcc
tacgtgccgtcgtcggacaccttcatcgagaaggacagttcgatcaacgagcacatcgag
cagatgcgcctggccgcgaccaagaccctgctgtcgcgcccggatgcgatcgtcgtggcg
acggtgtcggcgatctatggcctgggtgcaccggaagactacctgtcgctgcgcctgatc
ctgtccaggggcgagcgcatcgaccagcgcgacctgatcaaccacctgacccagcttcag
tacacgcgcaacgagtacgaactgcagcgcggtactttccgcgtgcgcggcgaagtgatc
gacgtgttcccggccgagtcggacagcgaggcgctgcgccttgaactgtttgatggcgag
gtcgagaagatcaccctgttcgatccgctcaccggcgagacgctgcgcaacatgcaacgc
ttcaccgtgtatccgaagacccactatgcgaccacgcgcgaacgcgtgctggcggcgatc
gagacgatcaaggtggagctgaaggagcggctggagcagctgtacgcgcagaacaagctg
gtggaggcgcagcgcctggcgcagcgcacccagttcgacctggagatgatggccgaggtc
ggctactgcaatggcatcgagaactactcacggcacctgaccggcaagaacgccggcgag
ccgccgccgaccctgttcgactacctgccggccgatgcgctgctggtgatcgacgaatcg
catgtgaccattccgcagatcggcgccatgttcaagggtgaccggtcacgcaaggaaacc
ctggtcgagttcggcttccgcctgccgtcggcgctggacaatcgtccgctgcgtttcgag
gaatgggaagagcgctgcccgcgcagcatctacgtgtcggccacgccgggcccgtatgag
taccgcgaggccggtgacgagatcaccgagctggtggtgcgcccgaccggcctgatcgac
ccggtggtggagatccgcccggtggggacccaggtcgacgacctgatgagcgaggccaac
gagcgcatcaaggcgggtgatcgcgtgctggtcaccacgctgaccaagcgcatggccgag
aacctcaccgaatacctgaccgagcatggcatccgcgtgcgctacctgcactcggacgtg
gacaccgtcgagcgcgtggagatcatccgtgacctgcgcctgggcaagttcgatgtgctg
gtcggcatcaacctgctgcgcgaaggcctggacatgcccgaggtgtcgctggtggcgatc
ctcgacgccgacaaggagggcttcctgcgttccaccggctcactgatccagaccatcggc
cgcgctgcccgcaacgtgcgtggcaaggcgatcctgtatgccgacaggatcacccgttcg
atgcaggcggcgatcgatgaaactgaccgtcgccgcgccaagcaggtcgagtacaacgcg
gaacatggcatcgtgccacgctcggtggcgcgcccgatcgtcgatgtcctcgagggcgcg
cgttcggatgctgcggagaaggaggcgaagaagggcaagggcaagggccgggcgggcgtg
gccgaagaggcggccgactatcgttcgctgtcgccagcgcaactgggcgttcgtctcaag
gcgctggaacagcagatgtaccagcacgccaaggacctggaattcgaggatgccgcgcgc
gtgcgtgaccagatccggcagctgaaggaagccagcctgggctga
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