Stenotrophomonas sp. WZN-1: CCR98_08860
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Entry
CCR98_08860 CDS
T04963
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
sten
Stenotrophomonas sp. WZN-1
Brite
KEGG Orthology (KO) [BR:
sten00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sten03009
]
CCR98_08860
Enzymes [BR:
sten01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CCR98_08860
Ribosome biogenesis [BR:
sten03009
]
Prokaryotic type
rRNA helicases
CCR98_08860
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
PRAI
Motif
Other DBs
NCBI-ProteinID:
ARZ74277
LinkDB
All DBs
Position
complement(1858578..1859954)
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AA seq
458 aa
AA seq
DB search
MTDFSTLPLSPALQPGLDALGYTTLTPVQAQSLPAILDGRDVIAQAPTGSGKTAAFGLGL
LQAIDPSLIRVQALVLCPTRELADQVGKQIRKLATGIPNLKLLLLVGGVPLGPQLASLEG
HDPHVVVGTPGRVQELARKRALNLGAVRALVLDEADRMLDMGFEEPIREIAGRTHRDRQS
LLFSATFPDSIRAMARDLLRDAVEVTVEGADQAPAIRHMFCEVEPAHRQKALAGLLLKYT
PESAVVFCNTRKDVDEVANSLQQFGFSALALHGDMEQRDREEVLLLLANRSCNVLVASDV
AARGLDVEELAAVINYELPTDVESYQHRVGRTGRAGASGLAISLVAGREKTRAEAIEAQM
GQPLDWQKTPLATSRPAELPQAAMRTLRIDGGKTDKLRPGDILGALTGDAGLSSKYIGKI
AIFPTRSYVAIAREQANKAVARLEAGKIKGRRFRVRMM
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgactgacttctcgaccctgccgctgagcccggccctgcagcccggcctggatgccctc
ggctacaccacccttacccccgtgcaggcgcagagcctgccggccatcctcgatggccgc
gatgtgatcgcacaggcaccgaccggcagcggcaagaccgccgccttcggcctgggcctg
ctgcaggccatcgaccccagcctgatccgcgtgcaggcgctggtgctgtgcccgacccgc
gaactggccgaccaggtcggcaagcagatccgcaagctggccactggcattcccaacctg
aagctgctgctgctggttggcggcgtgccgctgggaccgcagctggcatcgctggaaggc
cacgatccgcatgtggtggtcggcacgcccggccgcgtgcaggagctggcacgcaagcgt
gcgctgaacctgggcgcggtgcgcgcgctggtgctggatgaggccgaccgcatgctcgac
atgggcttcgaagagccgatccgcgagatcgccggccgcacccacagggaccggcagagc
ctgctgttctccgccaccttccccgacagcatccgcgccatggcgcgtgacctgctgcgc
gacgcagtggaagtgaccgtggaaggcgccgaccaggccccggccatccgccacatgttc
tgcgaggtggagccggcgcatcgccagaaggcgcttgccggcctgctgctgaagtacacg
ccggaatcggcggtggtgttctgcaacacccgcaaggacgtggacgaagtggccaactcg
ctgcagcagttcggcttctccgcactggccctgcacggtgacatggaacagcgcgaccgc
gaggaagtgctgttgctgctggccaaccgcagctgcaacgtgctggtggccagcgacgtg
gccgcacgcggcctggacgtggaagaactggcggcggtgatcaactacgaactgccgacc
gacgtggagagctaccagcaccgcgtcggccgtaccggtcgtgccggtgccagtggcctg
gcgatcagcctggtggccggccgcgagaagacccgcgccgaagccattgaagcgcagatg
gggcagccactggactggcagaagacgccgctggcgacctcgcgcccggccgagctgccg
caggcggcgatgcgcaccctgcggatcgacggcggcaagaccgacaagctgcgcccgggc
gacatcctcggcgcactgaccggcgacgccgggctgtcgagcaagtacatcggcaagatc
gcgatcttcccgacccgctcctatgtggcgatcgcgcgtgagcaggccaacaaggccgta
gccaggctggaagccggcaagatcaagggccgtcgtttccgcgtacggatgatgtga
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