Stenotrophomonas sp. WZN-1: CCR98_11980
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Entry
CCR98_11980 CDS
T04963
Name
(GenBank) type IV secretion protein Rhs
Organism
sten
Stenotrophomonas sp. WZN-1
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHS_repeat
DUF6531
RHS
Motif
Other DBs
NCBI-ProteinID:
ARZ76624
LinkDB
All DBs
Position
complement(2527430..2531809)
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AA seq
1459 aa
AA seq
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MVADFLADQQASNPVCPGAAVTPSGDWFAASPDQEGVIESRYYDLTSMAGNNTAESPCTP
YTGTVAVARTRRLNCPIPLTQWSNKHNACVSEEFVATITSKSQKCDKDGGNGNCPMSRND
TAANMSPIPDKDPASNGGTCDGNVGNPCDVKTGEKYEIAPDFDLGWIALTRFYHSGISTS
SGGFGYGWTHSLGAHLALDGVDSVGIIESTGFQRAFKKIGQAYEADDDSGDRLVQNGNWT
LYSADSISTFGADGRLAAKRFPDGTSLTYIYDDSDRLAAVTHSSGRTLEFVYQSNDYEAL
ISSVLVEGIALATYTYTPQNQVATVTYAGGGVRTYHYENQDFPQHLTGITAEDGRRYSTF
TYDSIGRVISSQHAGGADGVTLAYSPNGGAVVTDALGRQTDYTLTPGGDTAPSRKVTSLT
DSQGTVSRTYYDQSVDFRRRLDTYTDRRGIQTKHTYAQGTDPVSGRAISIHTVTEAVGLP
EQRVVTTARDVETNAVLTTRIGNRETRTSFNTRRQPTTNTVTDIASGQTRITSYTYCEAA
DVAAAGSCPVEGLLKSVDGPRTDVVDAVTYAYYPADDAGCAANGACSYRKGDLRSVTNAL
GQTVETLAYDAFGRPLSVKDANGVVTDYTYHPRGWPTSITVRGATTAEDRVTLLSYWPTG
QVQKITEPDGSSVSYVYDAALRLTDIEDTAGNTIHYTLDNAGNRLKEDTLDTGGTLRRTL
ARTFNTLGQLTALKDAGNHATGFAYDANGNPQTVTDALQRVTSQQYDPLNRLAQTLQDVG
GVAAEIRSQYNALDQVTQVTDPKGLHTTYAYNGFGDLTGQVSPDSGASSFTVDAAGNRKT
ATDARGVTATYHYDALNRLIGIAYPDPNLDVGYSYDVAPAACTADERFAKGRLGQVLHAN
GSTQYCHDRFGQVTRKVQTVNGVASTLRYAYSKSGRLTALTYPDGSVADYVRDIQGRISQ
IGLTRPGQARQIVVNNVSYAAFGPATGWTYGNGRQLQRPLDLDYRPQAVHDPAAGGLSLG
YGYDPVGSITELKNGTGSTVLAKYAYDALGRLTQTQDGATGTPIETYAYDATGNRTALTT
SAGTASYTYPATSHRLTAVDGEARNHDAVGNTTSIGSKTFTYNDANRMNAVKQGNAVLES
YAYNHRGERVMRTPAGGAAQITLYDEAGQWLGNYAATGQAQQQAIWLDNYPVALINVPST
GVPELAYVQPDHLGTPRVVIDPVRDVAIWEWSNKSEVFGNQIPSADPDGDGVAFELALRF
PGQQATDVSGLFYNYQREYDPAVGRYSQSDRIGLRGGISTYGYAGGVPSSLIDPLGLCPC
ECVDYLGMTFGVADLTFGGLEAVNGAGATIAGVLSLQPEVAIPGFLVMVNGGATAYDGVS
AIQTAQDGKERESIYTEVGGELLGPVGAKTGELLSFGLTFSGHLKATRKLLQRVATDKDA
LDAMKAVKDVSGGSGCNCK
NT seq
4380 nt
NT seq
+upstream
nt +downstream
nt
atggtggccgattttcttgcggaccaacaagccagcaatcccgtgtgccccggggcggcg
gtcactccgtctggcgattggtttgcggcttcgcccgatcaggaaggtgtcatcgagtca
cgctactacgatctgacttcaatggctggcaacaatacggctgaatcgccctgcaccccg
tataccgggacggttgcggtcgcgcgtacccggcgcttgaactgcccgattccgctcacg
cagtggtccaacaagcacaacgcctgcgtcagcgaagagttcgttgcgaccatcacctcg
aagtcgcaaaagtgcgacaaggacggcggcaacggtaactgccccatgtcccgcaacgac
acagctgcgaacatgagcccgattcccgacaaggacccggcctccaacggcggtacctgc
gacggcaatgtcggcaacccatgtgatgttaaaacgggcgagaagtatgagatcgcgccg
gacttcgatctgggctggatcgcgctgacgcgcttctaccactctggcatctccacgtcc
tccggcggcttcggttatggctggacccattcgctgggcgcccacctggcactggatggc
gttgacagtgtgggcatcattgaaagcaccggtttccagcgtgcattcaagaagatcggc
caagcctatgaagcggacgacgacagtggtgaccgtctggtccagaacggcaactggaca
ctgtactcggcggattccatctctaccttcggcgcggacgggcgtcttgccgccaagcgc
ttcccggatggcacgtcgctgacctacatctacgacgacagcgaccgccttgcggcggtc
acccacagcagtggccgcacactggagttcgtctaccagtccaacgactatgaggcgctg
atcagttcggtgctcgtcgaaggcattgcgctcgccacctatacctacacgccgcagaac
caggtcgccacggtgacctatgcgggtggtggtgtgcggacatatcactacgagaaccag
gacttcccccagcacctgaccggcatcaccgctgaggacggtcgccgctacagcaccttt
acctatgactccatcggtcgtgtgatctccagtcagcatgccggcggtgccgatggcgtg
acactggcctacagccccaatggtggtgcggtggtgaccgacgcgctggggcggcagacc
gactacaccctgacacccggcggcgacaccgcgccgtcgcgcaaggtgaccagcctgacg
gattcgcagggaaccgtcagccggacctactacgaccagagtgtcgacttccgccggcgt
ctggatacctacactgatcgccgcggcatccagaccaagcacacctatgcgcagggcact
gacccggtgagcggtcgtgccatcagcatccataccgtgaccgaagcggtcggcctgccc
gagcagcgggtggtgaccaccgcgcgcgacgtcgaaaccaatgcggtactgaccacccgc
attggcaatcgtgaaacccgaacgtccttcaatacccggcgccagccgacaaccaacacg
gtgaccgacatcgcgtccggtcagacgcgcatcaccagctacacctactgcgaagccgct
gatgtggcagcggcaggcagctgcccggtggaagggctgctgaagagcgtggatggtccg
cgcacggatgtggtcgatgccgttacctacgcctactacccggcggatgatgcgggatgc
gcggccaatggcgcctgcagctatcgcaagggcgacctgcgcagcgtgaccaatgcgctg
ggccagacggtcgagaccttggcctacgacgcgttcggacggccgctgtcggtcaaggac
gccaacggcgtggtgaccgattacacctaccatccccgcggttggccgacctccatcacc
gtgcgcggcgcgaccactgccgaagatcgggtcaccctgctgagctattggccgacgggc
caggtgcagaagatcaccgagccggatggcagcagcgtttcctacgtctacgatgctgcc
ctgcgcttgactgacatcgaggacaccgcaggcaacacgattcactacacgctggacaat
gccggcaaccgcctcaaggaagacacgctggacaccggcggcaccctgcgccgtaccctg
gcgcggacgttcaacacgctcggccagctgaccgcactgaaggatgcaggcaatcacgcc
accggctttgcctacgatgccaatggcaacccgcagacggtgaccgacgccctgcagcgg
gtgaccagccagcagtacgacccgctcaaccgactggcgcagaccctgcaggacgtcggc
ggcgtggcggcggagatccgcagccagtacaacgcgctggaccaggtcacccaggtcacc
gacccgaagggcctgcacaccacctacgcctacaacggtttcggtgatctgactggccag
gtcagcccggacagtggcgccagcagcttcaccgtggatgcggccggcaatcgcaagacc
gccaccgatgcgcgcggcgtcaccgccacctatcactacgatgcactcaatcgcctgatc
ggcatcgcctacccggaccccaatctggacgtgggctacagttacgacgtggcgcctgcc
gcgtgtaccgccgacgagcgctttgccaaggggcgcctggggcaggtgctgcatgccaac
ggcagcacccagtactgccatgaccgcttcggccaggtcacccgcaaggtgcagaccgtc
aatggtgtggccagcacgctgcgctacgcctacagcaagtcgggccgtctgactgcgttg
acctaccccgacggcagcgtggccgactacgtgcgtgatatccagggccgcatcagccag
atcggcctgacccggcccggccaggcgcgccagatcgtggtgaacaacgtgagctatgca
gccttcggtccggcgaccggctggacctacggcaatggccgccagctgcagcgtccgctg
gatctggactaccgcccgcaagcggtgcacgacccggccgcaggtggcctgtcgctgggc
tatggctatgacccggtcggttcgatcaccgagctgaagaacggcactggctcgacggtg
ctggccaagtacgcctacgacgcgctgggtcgcctgacccagacccaggacggcgcgacc
ggcacgccgattgaaacctatgcctacgacgccaccggcaatcgcaccgcgctgaccact
tcggcgggcactgccagctacacctatcccgcaaccagccatcggctgaccgccgtggac
ggcgaagcgcgcaaccatgacgcggtgggtaacaccaccagcatcggcagtaagaccttc
acctacaacgatgccaaccgcatgaacgcggtgaagcagggtaatgccgtactggaaagc
tacgcctacaatcatcgaggggagcgcgtgatgcgtaccccggccggcggcgcagcgcag
atcaccttgtacgacgaagcagggcagtggctgggcaactacgcggccacgggccaagcg
cagcagcaggccatctggttggacaactatccggtggcgctgatcaatgtgccgagcacc
ggcgtgccggaactggcctacgtgcagccggatcatctgggcacgccgcgcgtggtgatc
gacccggtgcgtgatgtcgcgatctgggagtggagcaataagagcgaagtgttcggcaac
cagattccgagtgccgacccggatggcgatggggtggcgttcgagctggcactgcgcttc
ccgggccagcaggcgacggatgtgagtgggttgttctacaactaccagagggagtacgac
cctgcagtggggcggtattcgcagagtgatcgcatcggactcaggggcgggatcagcaca
tacggatacgcaggtggcgtcccgtcgtctttgatagatccactcggtttgtgtccctgc
gagtgcgtcgactacttaggcatgacgttcggtgtggcagacctcacctttggaggcttg
gaagctgtgaatggcgcaggagccaccattgccggtgttttgtctctgcagcccgaagtt
gcaatccccggattcctggtaatggtgaatggtggagcgacggcgtacgatggagtgtca
gcgatacaaaccgctcaagatggaaaggagagagaatccatctacaccgaggtgggcggg
gagttgctggggccagttggcgcgaagacgggagagctgttgtcgtttggcttgacgttc
agcggtcaccttaaggccacgcggaaactgttgcaacgcgtagccactgacaaggatgca
ctggatgccatgaaggcggtgaaggatgtttcgggtggatccgggtgcaattgcaaataa
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