Stenotrophomonas sp. WZN-1: CCR98_14335
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Entry
CCR98_14335 CDS
T04963
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
sten
Stenotrophomonas sp. WZN-1
Brite
KEGG Orthology (KO) [BR:
sten00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sten03016
]
CCR98_14335 (rnd)
Enzymes [BR:
sten01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
CCR98_14335 (rnd)
Transfer RNA biogenesis [BR:
sten03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
CCR98_14335 (rnd)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
ARZ75300
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All DBs
Position
3031622..3032701
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AA seq
359 aa
AA seq
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MATWITTPAELDAYFQQRPARIGLDTEFIRERTFWPQLALVQMAVGQDILLIDPLIPGMT
EALAPWLADESIIKVMHSASEDLVAFKWTCGVLPRPLFDTQIGASLAGIGGGMGYQKLVA
EITGVALAKGETRSDWMRRPLSESQLQYAADDVEHLFALHDAIDAKLQALGRQQWLHDDG
ERLLASVANDEDRWPHLAMRSAQFLDAAAQHRLLRLLRWRDVQARSSDRPRSWILDNELA
ATLARTPPADAAALGKLFEQFPKAPRKLAGAVWQALDTPLADEAEAPLALPANDSNKQAL
KKLQDAVAERSRELGLPDGVLASRKHLESYLERRQWPAALSGWRQQELESRLQALLPAR
NT seq
1080 nt
NT seq
+upstream
nt +downstream
nt
gtggcaacctggatcaccacccccgccgagctggatgcgtacttccagcagcgcccggcc
cgcatcggcctggacaccgaattcatccgtgagcgcaccttctggccgcaactggccctg
gtgcagatggcggtcgggcaggacatcctgctgatcgacccgctgattcccggcatgacc
gaggccctggcgccctggctggccgatgaatccatcatcaaggtgatgcacagcgccagc
gaagacctggtcgccttcaagtggacctgtggtgtgttgccacggccactgttcgacacc
cagatcggagcctcgctggccggcatcggtggcggcatgggctaccagaagctggtcgca
gaaatcaccggcgtggcactggccaagggcgaaacccgctcggactggatgcgccgcccg
ctctcggaatcgcagctgcagtacgccgccgacgacgtcgagcacctgtttgcactgcac
gacgccatcgatgccaagctgcaggcgctgggccgccagcagtggctgcacgacgacggc
gagcgcctgctggccagcgtcgccaacgacgaagaccgttggccgcacctggcgatgcgc
tcggcgcagttcctcgacgccgccgcacagcaccgcctgctgcgcctgctgcgttggcgc
gatgtgcaggcgcgcagcagcgaccgcccgcgcagctggatcctggacaacgaactggcc
gccacgctggcacgcacgccaccggccgatgccgccgcactgggcaagctgttcgaacag
ttcccgaaggctccgcgcaagctcgcgggcgctgtgtggcaggcgctggatacgccgctg
gccgatgaggccgaggcaccgctggcgctgccggccaatgacagcaacaagcaggcactg
aagaagctgcaggatgccgtcgccgaacgcagccgcgaactgggcctgccggatggcgtg
ttggcctcgcgcaagcatctggaaagttatctggaacgccgccagtggccggccgcactt
tccggctggcgccagcaggaactggaatcacggttgcaggcgctgctgccggcacgttga
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