Stenotrophomonas sp. WZN-1: CCR98_18905
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Entry
CCR98_18905 CDS
T04963
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sten
Stenotrophomonas sp. WZN-1
Pathway
sten03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sten00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CCR98_18905 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sten03021
]
CCR98_18905 (rho)
03019 Messenger RNA biogenesis [BR:
sten03019
]
CCR98_18905 (rho)
Transcription machinery [BR:
sten03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CCR98_18905 (rho)
Messenger RNA biogenesis [BR:
sten03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CCR98_18905 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
OB_RNB
S1CSD-TOTE-2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ARZ76151
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All DBs
Position
4044643..4046394
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AA seq
583 aa
AA seq
DB search
MSDNTSETGSADAPAEKRVRKPRVSKAAAPAAAETSAAPAQPTLPLAAAPEAPAPAAAAP
APSAPAAEAPASGGGEGGEGRESGQRQQNHQGGGQNQNQGQGQNNNPYNQNGQQGQGNRR
DRFRNRRDRDRNRGGRDDGMPQDGGDQQPFVPRPHANVPEGFPVYSLSDLKRMPAQKLLE
IAEQLQISEGVARARKQDVIFALLKVLTRHGDGVAADGVLEILPDGFGFLRAAEASYLAG
PDDTYISPSQIRRFNLRTGDHISGRIRFPKDGERYFALNIVDTINGEPIEASKNKVLFEN
LTALFPRRRFTLERGNGSSEDITGRILDLMAPQGKGQRSLIVSQPKAGKTMMMQQVATAI
TTNHPDVHLIVLLIDERPEEVTEMQRTVRGEVISSTFDEPAARHVQVAEMVIERAKRLVE
HKKDVVILLDSITRLARAYNNVVPSSGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTI
IATALVDTGSKMDEVIYEEFKGTGNSEVHLSRRIAEKRVFPAIDINRSGTRREDLLIEPE
LLQKIWILRKLLHPMDEMAAMEFLLDKMKNTKSNDEFFGSMKR
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
ttgtccgataacacttccgaaaccggcagcgccgatgcgcccgccgaaaagcgcgtgcgc
aagccccgcgtgagcaaggccgccgctccggcagccgccgaaaccagcgccgctccggcg
cagccgaccctgccgctggcagccgcgcccgaagcgccggcaccggctgcagccgccccc
gcgccgagcgcgcctgccgctgaagcccccgcctccggcggcggtgagggtggcgaaggc
cgcgaatccggacagcgccagcagaaccaccagggcggtggccagaaccagaaccagggc
cagggtcagaacaacaacccgtacaaccagaacggccagcagggccagggcaatcgccgc
gaccgtttccgcaaccgtcgcgaccgtgaccgcaaccgcggtggccgtgatgacggcatg
ccgcaggacggtggcgatcagcagcccttcgtgccgcgtccgcacgccaatgtgccggaa
ggcttcccggtctactcgctgagcgacctcaagcgcatgccggcacagaagctgctggaa
atcgccgagcagctgcagatctccgaaggcgtggcccgtgcccgcaagcaggacgtgatc
ttcgccctgctgaaggtgctgacccgccacggcgacggcgttgccgccgatggcgtgctg
gaaatcctgccggacggcttcggcttcctgcgcgcggccgaagccagctacctggccggc
ccggacgacacctacatctcgcccagccagatccgccgcttcaacctgcgcaccggcgac
cacatctccggccgcatccgcttcccgaaggatggcgagcgctacttcgcgctgaacatc
gtcgacaccatcaacggcgagccgatcgaagcgtcgaagaacaaggtgctgttcgagaac
ctgaccgcgctgttcccgcgccgccgcttcaccctggagcgtggcaacggttcgtcggaa
gacattaccggccgcatcctcgatctgatggcgccgcagggcaagggccagcgttcgctc
atcgtgtcccagccgaaggcgggcaagacgatgatgatgcagcaggtcgccacggccatc
accaccaaccatccggacgtgcacctgatcgtgctgctgatcgatgagcgcccggaagaa
gtgaccgaaatgcagcgcaccgtgcgcggcgaggtcatcagctcgaccttcgacgagccg
gccgcgcgccacgtgcaggtggccgaaatggtcatcgagcgcgccaagcgcctggtcgag
cacaagaaggacgtggtgatcctgctcgactcgatcacccgcctggcccgcgcctacaac
aacgtggtgccgagctcgggcaaggtgctgaccggtggtgtggacgccaacgccctgcat
cgcccgaagcgcttcttcggtgccgcgcgcaacgtggaagaaggcggcagcctgaccatc
atcgccaccgcgctggtcgacaccggctcgaagatggacgaggtgatctacgaagagttc
aagggcaccggcaacagcgaagtgcacctgagccgtcgtatcgctgaaaagcgtgtgttc
ccggccatcgacatcaaccgttccggcacccgccgcgaagacctgctgatcgagccggag
ctgctgcagaagatctggatcctgcgcaagctgctgcatccgatggatgagatggccgcg
atggagttcctgctggacaagatgaagaacaccaagtccaacgacgagttcttcggatcg
atgaagcgctga
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