Stenotrophomonas sp. WZN-1: CCR98_20420
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Entry
CCR98_20420 CDS
T04963
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
sten
Stenotrophomonas sp. WZN-1
Pathway
sten03030
DNA replication
sten03410
Base excision repair
sten03420
Nucleotide excision repair
sten03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sten00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CCR98_20420
03410 Base excision repair
CCR98_20420
03420 Nucleotide excision repair
CCR98_20420
03440 Homologous recombination
CCR98_20420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sten03032
]
CCR98_20420
03400 DNA repair and recombination proteins [BR:
sten03400
]
CCR98_20420
Enzymes [BR:
sten01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CCR98_20420
DNA replication proteins [BR:
sten03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CCR98_20420
DNA repair and recombination proteins [BR:
sten03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
CCR98_20420
NER (nucleotide excision repair)
GGR (global genome repair) factors
CCR98_20420
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
ARZ76427
LinkDB
All DBs
Position
complement(4374883..4377657)
Genome browser
AA seq
924 aa
AA seq
DB search
MSRLVLIDGSSYLYRAFHALPPLSNAQGEPTGALFGVVNMLRSTLKERPAYVAFVVDAPG
KTFRDDLYEQYKANRPPMPDELRSQVEPMCRIVEALGISILRIPGVEADDVIGTLALQGL
AQDLKVTISTGDKDFAQLVRPGIELVNTMTGSRMDSDAVVMEKFGVRADQIIDLLALMGD
TVDNVPGVEKCGPKTAAKWLAEYQHLDGVMAAAPAMKGKIGENLRAALERLPLNRELVTI
RTDVALDASPTTLALREQDVPALTELYTRYGFTQALKELGAPLPAPAAASEATPSLRGTA
AGFARGSAEAPAAGTLDPALAAPGDYETVLTVEQLQAWVERLQQADLISFDTETDALDAM
RARLVGISLAVEPGKAAYIPVGHDYPGAPAQLPMQQVLDALRPVLQDPAKKKLGQHGKYD
LHVLRRHGVDVQGYHDDTMLESFVLNSTATRHDMDSLALRYLGYSAIKFEDVAGKGAKQI
PFSQVGIDEASRYAAEDADVTLRLHHALQPQLLAEPALDSVYRDIEMPLVPVLTTIEANG
VRIDTDELRRQSQDLSSRMLAAQQKATELAGRSFNLDSPKQLQAVLFDELKLPAVVKTPK
GQPSTNEEALEAIADQHELPRVILDYRGLAKLRSTYTDKLPEMVNPDTGRVHTSYHQSGA
ATGRLSSSDPNLQNIPIRTEDGRRIRRAFIAPEGFQLLAADYSQIELRIMAHLSEDPGLV
RAFEQGADVHRATAAEVFGRTLEEVTPNERRAAKAINFGLMYGMSAFGLARNLGIDRGQA
QDYVALYFSRYPGVRDFMERMRQQARDQGYVETLFGRRLYLNDIHARNQGLRAGAERAAI
NAPMQGTAADIIKRAMVDVDQWLRDSGAPARMILQVHDELVFETESSFVEDLRLQVVERM
SQAAKLRVPLVVDTGVGSNWDEAH
NT seq
2775 nt
NT seq
+upstream
nt +downstream
nt
atgagcagattagtcctgatcgacgggtccagttacctgtaccgcgcgttccacgcgctg
ccgcccctgtccaatgcacagggtgaacccaccggcgcgctgttcggcgtggtcaacatg
ctgcgctcgaccttgaaggagcgcccggcctacgtggcgttcgtggtcgacgcgccgggc
aagaccttccgcgacgacctgtacgagcagtacaaggccaaccgcccgccgatgcccgat
gaactgcgcagccaggtcgagccgatgtgccgcatcgtcgaagcgctgggcatcagcatc
ctgcgcattcccggcgtggaagccgacgatgtgatcggcacgctggccctgcagggcctg
gcgcaggacctgaaggtgaccatttccaccggcgacaaggacttcgcccagctggtgcgc
ccgggtatcgagctggtcaacaccatgaccggcagccgcatggattcggacgcggtggtg
atggagaagttcggcgtgcgcgccgaccagatcatcgacctgctggcgctgatgggcgac
accgtcgacaacgtgccgggcgtggagaagtgcggaccgaagaccgccgccaagtggctg
gccgagtaccagcacctggacggggtgatggcagccgcgccggccatgaagggcaagatc
ggcgagaacctgcgcgccgcgctggagcggctgccgctgaaccgcgagctggtgaccatc
cgcaccgacgtggcgctggacgccagcccgaccacgctggccctgcgcgagcaggacgtg
ccggcgctgaccgagctgtatacgcgctacggcttcacccaggcgctgaaggagctgggg
gcgccgctgccggcgccggccgcggccagcgaggccacgccgagcctgcgcggcaccgcc
gctggcttcgcccgtggcagcgccgaagcaccggccgccggcacgctggatccggcgttg
gccgcgccgggtgattacgagaccgtgctgaccgtcgaacagctgcaggcgtgggtcgag
cgcctgcagcaggcggacctgatcagcttcgataccgaaaccgatgcgctggatgcgatg
cgtgcgcgcctggtcggcatcagcctggcggtcgagcccggcaaggcggcctacattccg
gttggccacgattacccgggtgcgccagcgcagctgccgatgcagcaggtgctggatgcg
ctgcgcccggtgctgcaggacccggcgaagaagaagctgggccagcatggcaagtacgac
ctgcatgtgctgcgccgccacggcgtggacgtgcagggctaccacgacgacaccatgctc
gagagcttcgtgctcaattccaccgccacccgccacgacatggattcgctggccctgcgt
tacctgggctacagcgccatcaagttcgaggacgtggccggcaagggcgccaagcagatt
ccgttctcgcaggtgggcatcgacgaagccagccgctatgcggccgaagacgccgacgtc
accctgcgcctgcaccacgcgctgcagccgcagctgctggccgagccggcgctggacagc
gtgtaccgcgacatcgagatgccgctggtgccggtgctgaccacgatcgaagccaacggc
gtgcggatcgacaccgacgaactgcgccggcagagccaggacctctcctcgcgcatgctg
gccgcacagcagaaggccaccgagctggccggccgcagcttcaacctggattcgcccaag
cagctgcaggcggtgctgttcgacgaactgaagctgccggcggtggtgaagaccccgaag
ggccagcccagcaccaatgaagaggcgctggaggcgattgccgaccagcacgagttgccg
cgggtgatcctcgactaccggggcctggccaagctgcgcagcacctacaccgacaagctg
ccggagatggtcaacccggacaccggccgcgtgcataccagctaccaccagtccggtgcc
gccaccggccgcctgtcctcgtcggacccgaacctgcagaacatcccgatccgcaccgag
gacggccgccgcatccgccgcgcgttcatcgccccggagggcttccagctgctggcggcc
gactattcgcagatcgagctgcggatcatggcccacctgtccgaagacccgggcctggtg
cgtgccttcgagcagggcgccgacgtgcaccgtgccaccgccgccgaggtgttcgggcgc
acgctggaggaggtgaccccgaacgagcgccgtgccgccaaggcgatcaacttcggcctg
atgtacggcatgagcgccttcggcctggcccgcaacctgggcatcgaccgcggccaggcg
caggactacgtagcgctgtacttcagccgctacccgggcgtgcgcgacttcatggagcgg
atgcgccagcaggcccgtgaccagggctacgtggaaaccctgttcggccgccgcctgtac
ctgaacgacattcacgctcgcaaccagggcctgcgggccggtgccgaacgcgcggcgatc
aacgcgccgatgcagggcaccgctgccgacatcatcaagcgcgcgatggtggatgtggac
cagtggctgcgtgacagcggggcaccggcgcggatgatcctgcaggtgcacgatgagctg
gtgttcgaaaccgaaagcagtttcgttgaagacttgcgtttgcaggtggtggagcgtatg
tcgcaagcggccaaactgcgggtgccgctggtggtcgatacgggcgtcggcagcaactgg
gacgaagcgcactga
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