Stenotrophomonas sp. WZN-1: CCR98_20440
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Entry
CCR98_20440 CDS
T04963
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sten
Stenotrophomonas sp. WZN-1
Pathway
sten03420
Nucleotide excision repair
sten03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sten00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CCR98_20440
03430 Mismatch repair
CCR98_20440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sten03400
]
CCR98_20440
Enzymes [BR:
sten01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CCR98_20440
DNA repair and recombination proteins [BR:
sten03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CCR98_20440
MMR (mismatch excision repair)
Other MMR factors
CCR98_20440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
ARZ76431
LinkDB
All DBs
Position
complement(4379715..4381907)
Genome browser
AA seq
730 aa
AA seq
DB search
MDVSHLLDGLNPAQREAVSAPPGHHLVLAGAGSGKTRVLTHRIAWLHEVDGVPTHGIFAV
TFTNKAAGEMRHRIDAQLPNGSRGMWIGTFHGLANRLLRLHWQDAKLPEGFQVMDSDDQL
RLVKRVVQALELDDGKYPAKQIAWWINAQKDEGRRPQHIQPEPHDAWLETMRQAYIEYQA
RCDRAGLVDFAELLLRAHELLRDNPALLSHYRARFREILVDEFQDTNAIQYAFVRVLAGD
SGHVFVVGDDDQAIYGWRGAKVENVQGFLRDFPGAQTIRLEQNYRSTANILGAANAVIAH
NPDRIGKQLWTDSGDGEPIDLYAAYNEMDEARYIVERARQWVRDGGSYTEVAVLYRSNAQ
SRALEEALLSEQVPYRVYGGMRFFERAEIKDALAYLRLLSNRNDDAAFERAVNTPTRGIG
DRTLDEVRREARAQGISLWEATMLVTQGSALAARARNALAGFLVLVNELQAQTLHMTLAE
RVDHVLARSQLREHWSKESRNALDSESRTDNLDELVSVASRFVRRADDIEEVGEDMDELV
AFLAYAALEAGEGQAQAGEDGVQLMTLHSAKGLEFPLVFLAGLEEGLFPSARSLEESGRL
EEERRLAYVGITRARQKLVLSYAESRRIHGQDNYSLPSRFLREIPRELLHEVRPKVQVSR
PASMGASRVMGHASIEAPPIKLGALVTHPKFGEGMVTDYEGNGAHARVQVEFADAGSKWL
VMAYANLTVI
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atggatgtctcccacctgcttgatggcctgaacccggcccagcgcgaagccgtctccgct
ccccccggccaccacctggtgctggccggtgccggttccggcaagacccgcgtactcacc
caccgcatcgcctggctgcatgaagtcgatggcgtgccgacccacggcattttcgcggtg
accttcaccaacaaggcggccggcgaaatgcgccaccgcatcgacgcacagctgcccaat
ggcagccgtggcatgtggatcggcaccttccacggcctggccaaccgcctgctgcgcctg
cactggcaggacgcgaagctgccggaaggcttccaggtgatggattcggacgaccagctg
cggctggtcaagcgcgtggtgcaggcgctggaactggacgacggcaagtacccggccaag
cagatcgcgtggtggatcaacgcgcagaaggacgaaggccgccgcccgcagcacatccag
cccgagccgcacgatgcctggctggaaaccatgcgccaggcctacatcgagtaccaggca
cgctgcgaccgcgccggcctggtcgacttcgccgagctgctgctgcgcgcgcacgaactg
ctgcgcgacaacccggcgttgctgtcgcactaccgcgcgcgcttccgcgagatcctggtg
gacgagttccaggacaccaatgccatccagtacgccttcgtgcgcgtgctggccggcgat
tccggccacgtgtttgtggtcggcgacgatgaccaggccatctacggctggcgcggtgcc
aaggtcgagaacgtgcagggcttcctgcgcgacttcccgggcgcgcagaccatccgcctg
gaacagaactaccgctccaccgccaacatcctcggcgccgccaatgcggtgatcgcgcac
aaccccgaccgcatcggcaagcagctgtggaccgacagcggcgacggcgagccgatcgac
ctgtacgccgcctacaacgagatggacgaggcacgctacatcgtcgagcgcgcgcgccag
tgggtgcgtgacggtggcagctataccgaagtggccgtgctctaccgcagcaatgcgcag
tcgcgcgcgctggaagaagcgctgctgagcgaacaggtgccgtaccgcgtgtacggtggc
atgcgcttcttcgagcgtgccgaaatcaaggacgcgctggcctacctgcgcctgctgtcc
aaccgcaacgacgacgcggcgttcgagcgcgcggtcaacacgccgacgcgtggcatcggc
gaccgcacgctggacgaagtgcgccgcgaggcgcgcgcgcagggcatttcgctgtgggaa
gcgaccatgctggtcacccagggcagcgcgctggccgcgcgtgcgcgcaatgcgctggcg
ggcttcctggtgctggtcaacgagctgcaggcgcagaccctgcacatgaccctggccgag
cgcgtggaccacgtgctggcccgctcgcagctgcgcgagcactggagcaaggaaagccgc
aacgcgctggactccgaatcgcgcaccgacaacctcgacgaactggtctcggtggcctcg
cgcttcgtgcgccgcgccgacgatatcgaggaagtgggagaggacatggacgagctggtc
gcgttcctggcctacgccgcgctggaggccggtgagggccaggcgcaggcgggcgaggac
ggcgtgcagctgatgaccctgcactcggccaaggggctggaattcccgctggtgttcctg
gccggcctggaagaaggcctgttccccagcgcacgctcgctggaggaaagcgggcggctg
gaagaagagcgccgcctggcctacgtgggcatcacccgcgcgcgccagaagctggtgctg
agttatgccgaatcgcgccgcatccacggccaggacaattacagcctgccgtcgcgcttc
ctgcgcgagatcccgcgcgagctgctgcacgaagtgcgcccgaaggtgcaggtttcgcga
ccggcctcgatgggcgccagccgggtgatgggccatgcctcgatcgaggcaccgccgatc
aagctcggcgcgctggttacccatcccaagttcggcgaaggcatggtgaccgactacgaa
ggcaacggtgcccacgcccgcgtgcaggtcgagtttgccgacgccggcagcaagtggctt
gtgatggcctacgccaacctgacggtgatctga
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