Stenotrophomonas sp. WZN-1: CCR98_20850
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Entry
CCR98_20850 CDS
T04963
Symbol
recC
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
sten
Stenotrophomonas sp. WZN-1
Pathway
sten03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sten00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CCR98_20850 (recC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sten03400
]
CCR98_20850 (recC)
Enzymes [BR:
sten01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
CCR98_20850 (recC)
DNA repair and recombination proteins [BR:
sten03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CCR98_20850 (recC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
NNH6
Motif
Other DBs
NCBI-ProteinID:
ARZ76500
LinkDB
All DBs
Position
complement(4484193..4487537)
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AA seq
1114 aa
AA seq
DB search
MMSDPGSDFRLYHSNSLDVLAALLARNMRAPVPGQPLLAPEVVLIPQVAMRRWLQATLAA
EYGVAANLEFLTPGEFVARALNANVPGERDDLDAAGLHWKLYQALRDPALLAQPPMRALQ
SYLAGGDALKPWALAGELASVFEKYQAWRRDWLLRWEAGADPADPQAILWRTIAGGHDYR
ARRIQAYLDRFEGAGQPLPQGLPPRMSAFATLNISPDVLRVMATQARVGELHFYMPTPVQ
SYWGDLQTLAERLRSGAPDPFGEAAGENRLLEAWGAAGRDFMAVLGSYEVVHPAGEIAAY
SDPEEDTRPTLDEGGLSDSLLHRLQRDLFHRRALPSGQLRDDLRRDDPSLQVHACHTRLR
ELQVLHDQLRSLLQDPRFDPPLQAREIAVLAPDIDPYVPYLEAVFGGRGGEEEHIPYALA
DSSPLAGEPLADVFVHLLGLPVSRFGLNEVLDLLASAPLAEAAGLEAVDFDRLHGWLQQA
GARWGLDAKHRNQHQAPADDAYTWQFALDRLVLGHATGSEADLAGVAPWIELEGGALEAL
DRLLRLLRVLAVYQRRLGELLTPAQWRQRLLSLLDALLPTAPSSPNSQRALERLRKLLNQ
FADDAAKAGFEDGVPPEVVRSHFAGALGEADTRAPLLTGGISFGRMVPMRLLPFRVICVL
GLNDGDFPRRDPAAGLNQLTAELDTPRRRPGDRSTREDDRFLFLQLFAAAQEVFYLSYLG
ADPRDGSVREPSVLVSELIDAAAAYHFDPPAAARDFTVRHALQPFSPAAFGDGDSRRFSY
RRQWHPAAGRLIGQRGGLQPWFDAALPPLDDAVEDDVALDTLRRFLCDPAGQFLAQSLGL
RLADDVEEVDDLEPLVLSSRGPEKRSVQAAVVRATLSGDTEPLYPRLRARGLLPSGPLGE
RQFEVEQLKTRPYASALLGWMQGEPLESRRYEVEIDGVRLHGRVADRHPDGLVRLRAGTL
NGNAVIRQGLDWLLANAAGDALPLVQFHDGGDAGPGPHVLPALSVPAARAALRALLQLRQ
RGLREPLRFAPYTGWVLYNAPAEKQRSEGWKQWHGSDRSWGESSSDAWQLLLRGADPFAT
DASYADLLRNSQVVFSAVREGRTLGADARQEGSA
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
atgatgagtgacccgggcagcgatttccgcctctaccattccaactccctggacgtgctg
gccgcgctgctggcgcgcaacatgcgtgcgccggttccgggccagccgctgctggcgccg
gaggtggtgctgatcccgcaggtggcgatgcggcgttggctgcaagcgacactcgctgcc
gaatatggcgtggctgccaatcttgagttcctgacgccgggcgagtttgttgcccgtgcg
ctcaacgccaatgtgccgggtgaacgcgacgacctggacgcggctggcctgcactggaag
ctgtaccaggcactgcgcgacccggcgctgctggcgcagccaccgatgcgcgcgctgcag
tcctatcttgccggcggcgacgcgctgaagccgtgggcactggccggtgaactggcctcg
gtgttcgaaaagtaccaggcctggcgccgcgactggctgctgcgctgggaggccggcgcc
gacccggccgacccgcaggcgatcctctggcgcaccatcgccggtggccacgactaccgc
gcgcgccgcatccaggcctacctggaccgcttcgagggcgccggccagccgttgccacag
ggcctgccgccgcgcatgtccgcgttcgcgacgctcaatatctcgcccgacgtgctgcgg
gtgatggccacccaggcccgggtcggcgagctgcacttctatatgcccactccggtgcag
tcgtactggggtgacttgcagacgctggccgagcgcctgcgcagcggcgcgcccgatccc
ttcggtgaagcggccggtgagaaccgtctgctggaagcctggggcgcggccggccgcgac
ttcatggcggtgctgggcagctacgaggtggtgcacccggccggcgagattgcggcctat
tccgatccggaagaagacacgcgtccgaccctggacgaaggtggcctgtccgacagcctg
ctgcatcgcctgcagcgcgatctgttccaccgccgcgcgctgccttcggggcagctgcgc
gacgacctgcgccgcgacgacccgagcctgcaggtacacgcctgccatacccgcctgcgc
gaactgcaggtgctgcacgaccagctgcgcagcctgctgcaggacccgcgcttcgatccg
ccactgcaggcgcgcgagatcgcggtgctggcgccggacatcgatccctatgtgccgtac
ctggaagcggtgttcggcggccgtggcggcgaggaagagcacattccgtatgcgctggcc
gacagcagtccactggcgggcgagccgttggccgatgtgttcgtacacctgctgggcctg
ccggtctcgcgcttcggcctgaacgaagtgctggacctgctggccagcgcgccactggcc
gaagcggccggtctggaagcggtggacttcgaccgcctgcatggctggctgcagcaggcg
ggcgcacgctggggcctggatgccaagcaccgcaaccagcaccaggcaccagccgacgac
gcctacacctggcagttcgcgctggaccgcctggtgctcggtcacgcgaccggcagcgag
gccgacctggccggtgttgcaccgtggatcgagctggagggcggcgcattggaagcgctg
gaccggctgctgcgcctgctgcgcgtgttggcggtctaccagcgtcgcctcggcgagctg
ctgacgccggcgcagtggcggcagcgcctgctgtcgctgctggacgcgctgctgccgacc
gcgcccagctcgcccaacagccagcgcgcgctggagcgcctgcgcaagctgctcaaccag
ttcgccgacgatgccgccaaggccggtttcgaagacggcgtgccaccggaggtggtgcgt
tcgcatttcgccggcgcgctgggcgaggccgatacgcgcgcaccgctgctgaccggtggc
atcagcttcggccgcatggtgccgatgcgcctgctgccgttccgggtgatctgcgtgctg
ggcctcaatgatggcgacttcccgcgccgtgacccggcggccggtctcaaccagctcacc
gccgagttggacacgccgcgccgccgtcccggcgaccgctccacccgcgaagacgaccgt
ttcctgttcctgcagctgttcgctgccgcgcaggaggtgttctacctcagctacctcggt
gccgatccgcgcgatggcagcgtgcgcgagccgtcggtgctggtcagcgaactgattgat
gccgccgccgcgtatcacttcgatccgcctgcggcggcccgtgacttcaccgtgcgccac
gcactgcagccgttctcgccggcggcgttcggtgatggcgattcacgccgcttcagctat
cgccgccaatggcatccggccgccggtcgcctcatcggccagcgcggcggcctgcagccg
tggttcgatgcggcgttgccgccgctcgacgatgcggtggaagacgacgtcgcactcgat
accctgcgccgtttcctgtgcgacccggccgggcagtttctcgcacagtcgctgggcctg
cgcctggccgacgacgtcgaggaggtcgatgacctggagccgctggtgctgtcatcacgc
gggccggagaagcgcagcgtgcaggcggcggtggtgcgggccacgctcagcggcgatacc
gagccgttgtacccacgcctgcgcgcacgcggcctgctgccctcgggtccattgggcgag
cggcagttcgaggtggagcagttgaagacgcgcccgtatgccagtgcattgctgggctgg
atgcagggcgaaccactcgaaagccgccgctatgaagtggagatcgatggcgtgcgcctg
catggccgggtggcggatcgacaccccgacgggctggtgcgcctgcgtgccggtaccctc
aatggcaatgcggtgatccgccagggcctggactggctgctggccaacgctgccggcgat
gcgttgccgctggtgcagttccacgatggcggcgatgccggtcccggcccgcatgtgctg
ccggcgttgagcgttcctgctgcacgcgccgcgctgcgcgcattgctgcagctgcgccag
cgtggcctgcgtgaaccgctgcgctttgccccgtacaccggctgggtgctgtacaacgcg
ccggcagaaaaacagcgcagcgaaggctggaagcagtggcacggcagcgaccgcagctgg
ggtgaatccagcagcgacgcctggcagctgctgctgcgcggtgccgatccgttcgccacc
gatgccagctatgccgacctgctgcgcaacagccaggtggtcttcagcgcagtgcgcgag
ggccgcacccttggcgccgatgcacgccaggagggcagcgcatga
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