Stenotrophomonas sp. Pemsol: PEM_01040
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Entry
PEM_01040 CDS
T10809
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
steo Stenotrophomonas sp. Pemsol
Pathway
steo00521
Streptomycin biosynthesis
steo00523
Polyketide sugar unit biosynthesis
steo00525
Acarbose and validamycin biosynthesis
steo00541
Biosynthesis of various nucleotide sugars
steo01100
Metabolic pathways
steo01110
Biosynthesis of secondary metabolites
steo01250
Biosynthesis of nucleotide sugars
Module
steo_M00793
dTDP-L-rhamnose biosynthesis, glucose-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
steo00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
PEM_01040 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
PEM_01040 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
PEM_01040 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
PEM_01040 (rfbB)
00525 Acarbose and validamycin biosynthesis
PEM_01040 (rfbB)
Enzymes [BR:
steo01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
PEM_01040 (rfbB)
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GFIT
Motif
Pfam:
GDP_Man_Dehyd
Epimerase
RmlD_sub_bind
Polysacc_synt_2
3Beta_HSD
adh_short
NAD_binding_4
NAD_binding_10
Motif
Other DBs
NCBI-ProteinID:
AYA89419
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Position
227280..228335
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AA seq
351 aa
AA seq
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MPTWLVTGGAGFIGGNFVLEAVARGVKVVNLDALTYAGNLKTLSSLDGNPNHVFVQGDIG
DSALVTRLLAEHQPDAVLNFAAESHVDRSIDGPGAFIQTNVVGTLGLLEAVRDYWKALPA
EQGAAFRFLHVSTDEVYGTLGETGKFSETTPYAPNSPYSASKAASDHLVRAFHHTYGLPV
LTTNCSNNYGPYHFPEKLIPLVIAKALAGEPLPVYGDGKQVRDWLFVSDHCEAIRTVLAK
GQVGETYNVGGNSEKQNIEVVQAICALLDQRRPRADGQPRSSQITYVTDRPGHDRRYAID
ASKLKNDLGWEPAYTFEQGIAFTVDWYLDNQDWVNGVLDGSYRLQRIGTAA
NT seq
1056 nt
NT seq
+upstream
nt +downstream
nt
gtgcccacatggcttgtcaccggcggtgccggattcattggcggtaacttcgttctcgag
gccgtcgcacgcggcgtcaaggtcgtcaatctcgacgccctgacctatgccggcaatctg
aagaccctgtccagcctggacggcaacccgaaccacgtgttcgtgcagggtgacatcggc
gacagcgccctggtcacccgcctgctggccgaacaccagcccgacgccgtactgaatttc
gccgctgagagccacgtggaccgttccatcgacggcccgggtgcgttcatccagaccaac
gtggtgggcaccctgggcctgctggaagcggtccgtgactactggaaggcgctgccggcc
gaacagggcgcggccttccgcttcctgcacgtgtccaccgacgaggtgtacggcaccctg
ggcgagaccggcaagttcagtgaaaccacgccgtacgccccgaattccccgtattcggcg
tcgaaggccgcttcggaccacctggtgcgtgcgttccaccacacctacgggctgccggtg
ctgaccaccaactgctccaacaactacggcccgtatcacttcccagagaagctgatcccg
ctggtgatcgccaaggcgctggccggcgagccgctgccggtgtacggcgatggcaagcag
gtgcgtgactggctgttcgtgtccgaccattgcgaagcgatccgcaccgtactggccaag
ggccaggtcggcgagacctacaacgtcggcggcaattcggaaaagcagaacatcgaagtg
gtgcaggccatctgcgcactgctggaccagcgccgcccgcgtgcggatggccagccgcgc
agcagccagatcacctatgtcactgaccgccccggccatgatcgccgctatgcgatcgat
gcgtccaagctgaagaacgatctgggctgggaaccggcctacaccttcgagcagggcatc
gcctttaccgtcgactggtacctggacaaccaggactgggtcaacggcgtgctggacggc
agctaccgtctgcagcgcatcggcactgcggcctga
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