Stenotrophomonas sp. Pemsol: PEM_02290
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Entry
PEM_02290 CDS
T10809
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
steo Stenotrophomonas sp. Pemsol
Pathway
steo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
steo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PEM_02290 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
steo03021
]
PEM_02290 (rpoB)
03400 DNA repair and recombination proteins [BR:
steo03400
]
PEM_02290 (rpoB)
Enzymes [BR:
steo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PEM_02290 (rpoB)
Transcription machinery [BR:
steo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PEM_02290 (rpoB)
DNA repair and recombination proteins [BR:
steo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PEM_02290 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
PrmC_N
Motif
Other DBs
NCBI-ProteinID:
AYA89643
LinkDB
All DBs
Position
511227..515381
Genome browser
AA seq
1384 aa
AA seq
DB search
MTSYSFTEKKRIRKDFGKQRSILEVPFLLAIQVDSYREFLQENVDPAKRTDHGLHAALKS
VFPIASYSGNAALEYVGYKLGEPVFDERECRQRGMSYGAPLRVTVRLVIYDRESSTKAIK
YVKEQEVYLGEIPLMTENGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSAR
IIPYRGSWLDFEFDPKDALFTRIDRRRKLPVSILLRALGYSNEEMLAEFFEINTFHINPD
EGVQLELVPERLRGETLGFDLADGDKVIVEAGKRITARHIKQLEASGIAALAVPDDYIVG
RILSHDVVDASTGELLAQANDEITDEQLQAFRKAGVDAVGTLWVNDLDRGPYLSNTLRID
PTKTQLEALVEIYRMMRPGEPPTKDAAQNLFHNLFFTFERYDLSAVGRMKFNRRVGRKET
TGEAVLYDSKYFGERNDEESKRLVAAHGESSDILDVIKVLTEIRNGRGVVDDIDHLGNRR
VRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQLS
QFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIGLI
NSLAVYARTNKYGFLETPYRKVVDGKVYDEVEFLSAIEENEYVIAQANALTDAKGTLTEQ
FVPCRFQGESLLKPPAEVHFMDVSPMQTVSIAAALVPFLEHDDANRALMGANMQRQAVPT
LRSQKPLVGTGIERAVARDSGVTVNARRGGEIVQIDAARIVVKVNEEEIVGATDAGVDIY
NLVKYTRSNQNTCINQRPLVQVGDVIARGDVLADGPSTDIGELALGQNMLIAFMPWNGYN
FEDSILLSERVVEEDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLDESGVV
YIGAEVRAGDILVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVIDV
QVFTRDGIEKDKRARQIEESEIKRVKKDFDDQFRILEAAIYMRLRSQIVGKVVNGGAGLK
KGDVITDAFLDGLKKSDWFALRMKDEDASEAIERAQKQIQAHEKEFERRFADKRGKITAG
DDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSNVVPVEDMPYMASGETVDIVLN
PLGVPSRMNIGQILEVHLGWAAKGLGRKIQAMLEAQAAVADLRKFLDDIYNHDDTNVANR
VDLSQFSDEELLRLARNLTDGVPMATPVFDGATEAEIKRMLELADLPSSGQTQLYDGRTG
EAFDRHTTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL
EAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEHEMVAGMPESFNVLVKEIRSLAINME
LEDN
NT seq
4155 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcctattcgttcaccgaaaaaaagcgtatccgcaaggatttcggcaagcagcgc
tcgattctcgaagtgccgttcctgctcgccatccaggtggattcctatcgtgaattcctg
caggaaaacgtcgatccggccaagcgcacggaccacggcctgcacgctgcgctgaagtcg
gtcttcccgatcgccagctacagcggcaacgctgccctggaatacgtcggctacaagctg
ggcgaaccggtcttcgacgagcgtgagtgccgccagcgcggcatgagctacggcgccccg
ctgcgcgtgaccgtgcgcctggtgatctacgaccgtgagtcgtcgaccaaggccatcaag
tacgtgaaggagcaggaggtctatctgggcgaaatcccgctgatgaccgagaacggcacc
ttcatcgtcaacggcaccgagcgcgtcatcgtctcccagctgcaccgctcgccgggcgtg
ttcttcgaccacgaccgtggcaagacccacagctcgggcaagctgctgtacagcgcccgc
atcattccttaccgcggctcctggctggacttcgagttcgacccgaaggacgcgctgttc
acccgtatcgaccgccgccgcaagctgccggtgtcgatcctgctgcgcgcgctcggctac
agcaacgaagagatgctggccgagttcttcgagatcaacaccttccacatcaacccggat
gaaggcgtccagctggagctggtgccggagcgcctgcgtggcgagaccctgggcttcgac
ctcgccgacggcgacaaggtcatcgtggaagccggcaagcgcatcaccgcgcgtcacatc
aagcagctggaagcctcgggcattgccgccctggccgtgccggacgactacatcgtcggc
cgcatcctgtcgcacgacgtggtcgatgcctcgaccggcgaactgctggcccaggccaac
gacgagatcacggacgagcagctgcaggccttccgcaaggccggtgtggatgccgtgggc
accctgtgggtgaacgacctggatcgtggcccgtacctgtccaacaccctgcgtatcgac
ccgaccaagacccagctggaagccctggtcgagatctaccgcatgatgcgtccgggcgag
ccgccgaccaaggatgccgcgcagaacctgttccacaacctgttcttcaccttcgagcgc
tacgacctgtccgcggtcggccgcatgaagttcaaccgtcgcgtgggccgcaaggaaacc
accggcgaagccgtgctgtacgacagcaagtacttcggcgagcgcaacgacgaagagtcc
aagcgcctggtcgctgcccacggcgaaagctccgacatcctggacgtgatcaaggtcctg
accgagatccgcaacggtcgcggcgtggtcgacgacatcgatcacctgggcaaccgtcgc
gtgcgttcggtcggcgaaatggccgagaacgtgttccgcgtcggcctggtccgcgtcgag
cgtgcggtcaaggagcgcctgtcgatggccgagtcggaaggcctgaccccgcaggaactg
atcaacgccaagccggtcgccgctgccatcaaggagttcttcggctcctcgcagctgtcg
cagttcatggaccagaacaacccgctgtcggaagtgacccacaagcgtcgcgtctcggcc
ctgggcccgggcggcctgacccgtgagcgcgccggcttcgaagtgcgcgacgtgcacccg
acccattacggccgcgtctgcaccatcgaaaccccggaaggcccgaacatcggcctgatc
aactcgctggccgtgtacgcccgcaccaacaagtacggtttcctcgagaccccgtaccgc
aaggtcgtggacggcaaggtctatgacgaagtcgagttcctgtcggccattgaagagaac
gagtacgtcattgcgcaggccaacgcgctgaccgacgccaagggcaccctgaccgagcag
ttcgttccgtgccgcttccagggcgagtcgctgctgaagccgccggcggaagtccacttc
atggacgtttcgccgatgcagaccgtctcgatcgcggccgcgctggttccgttcctggag
cacgatgacgcgaaccgcgcactgatgggcgccaacatgcagcgtcaggccgtgccgacc
ctgcgttcgcagaagccgctggtcggtaccggcatcgagcgcgccgtggcgcgtgactcg
ggtgtgaccgtgaacgcccgtcgtggtggtgagatcgtgcagatcgacgccgcccgcatc
gtggtcaaggtcaacgaggaagagatcgttggcgccaccgacgccggcgtggacatctac
aacctggtcaagtacacccggtcgaaccagaacacctgcatcaaccagcgtccgctggtc
caggtgggtgacgtcatcgcccgcggcgacgtgctggccgacggtccgtccaccgacatc
ggcgagctggccctgggccagaacatgctgatcgcgttcatgccgtggaacggctacaac
ttcgaagactccatcctgctctccgagcgcgtggtggaagaggatcgctacaccacgatc
cacatcgaagagctgacctgcgtcgcgcgtgacaccaagctggggccggaggaaatctcc
gccgacatcccgaacgtctccgagcaggcgctgaaccgcctggacgagagcggcgtggtg
tacatcggtgcagaagtgcgcgctggcgacatcctggtcggcaaggtcaccccgaagggc
gaaagccagctgaccccggaagagaagctgctgcgcgcgatcttcggcgagaaggcttcg
gacgttaaggacagctcgctgcgcgttccgccgggcatggacggcaccgtcatcgacgtg
caggtcttcacccgcgacggcatcgagaaggacaagcgcgcccgccagatcgaagagtcc
gaaatcaagcgcgtcaagaaggacttcgatgaccagttccgcatcctggaagcggccatc
tacatgcgtctgcgttcgcagatcgtgggcaaggtggtcaatggtggtgctggcctgaag
aagggtgacgtgatcaccgacgccttcctcgacggcctgaagaagtctgactggttcgcc
ctgcgcatgaaggacgaggacgcctcggaagccatcgagcgcgcccagaagcagatccag
gcgcacgagaaggaattcgagcgtcgcttcgccgacaagcgcggcaagatcaccgcgggc
gacgatctcgccccgggcgtgctgaagatggtcaaggtgttcctggcggtgaagcgccgc
atccagccgggcgacaagatggcaggccgccacggcaacaagggtgtggtgtccaacgtg
gtgccggtcgaggacatgccgtacatggcctcgggcgagaccgtggacatcgtgctgaac
ccgctgggcgtgccgtcgcgtatgaacatcggccagatcctggaagtgcacctgggctgg
gccgccaagggtctgggtcgcaagatccaggcgatgctggaagcccaggcggcggtcgcc
gacctgcgcaagttcctggacgacatctacaaccacgacgacaccaacgtggccaaccgt
gtcgacctgtcgcagttcagcgacgaggaactgctgcgcctggcccgcaacctgaccgac
ggcgtgccgatggccaccccggtgttcgacggcgccaccgaagcggaaatcaagcgcatg
ctggaactggccgacctgccgagcagtggccagacccagctgtacgacggccgcaccggt
gaagccttcgaccgccataccaccgtcggttacatgcactacctgaagctgaaccacctg
gtcgacgacaagatgcacgcccgttcgaccggtccgtactcgctcgtcacccagcagccg
ctgggcggcaaggcgcagttcggcggccagcgcttcggtgaaatggaagtctgggcgctg
gaagcctacggcgcggcctacaccctgcaggaaatgctgacggtgaagtccgatgacgtg
cagggccgcaaccagatgtacaagaacatcgtcgacggcgagcacgagatggtcgcgggc
atgccggaatccttcaacgtgctcgtgaaggaaatccgctcgctggccatcaacatggaa
ctggaagacaactga
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integrated database retrieval system
