Stenotrophomonas sp. Pemsol: PEM_02295
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Entry
PEM_02295 CDS
T10809
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
steo Stenotrophomonas sp. Pemsol
Pathway
steo03020
RNA polymerase
Brite
Enzymes [BR:
steo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PEM_02295 (rpoC)
Transcription machinery [BR:
steo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PEM_02295 (rpoC)
DNA repair and recombination proteins [BR:
steo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PEM_02295 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
AYA89644
LinkDB
All DBs
Position
515469..519692
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLNLFNQQRQTLDFDAIKIALASPDLIRSWSFGEVKKPETINYRTFKPERDGLFCAA
IFGPVKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFEAYVVTEPGLTALERRQLLTEEQYLQARQEHGDDFDAAM
GAEAVYELLRTIDLQSEMTRLREEIAATGSETKLKRLTKRIKLIEAFLESGNRPEWMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELSAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPY
LRLHQCGLPKKMALELFKPFVFAKLQRRGLATTIKAAKKLVEREEAEVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRSLENKKGEGMAFANIAEVKRAYDNR
VVELHAKVKVRITEVVTDEDGNKQNKTSIVDTTIGRALLAEILPEGLPFALANVELTKKN
ISRLINSSYRQLGLKDTVVFADKLMYTGFAYATRAGVSIGIDDMLIPDEKKGILTEAEAE
VLEIQEQYQSGLVTAGERYNKVVDIWSRTNERIAKAMMDTIGTEKVVNAKGETIDQKSMN
SLYIMADSGARGSQAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVQEYFNSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITEVDCGTTEGLIMTPIVEGGDVVEPLKDRVL
GRVVAEDVFLPGNDEDPIVTRNTLLDEAWVAKLEDAGVQTIKVRSTISCESAFGVCSRCY
GRDLARGHLVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNITVKTTGSVK
FSNLKSVEHANGSLVAVSRSGEISVLDAHGRERERYKLPYGATITSKDGDAIKAGQTVAN
WDPHNHPIVSEVAGFIRFIDFVDGVTVIEKTDELTGLASREITDPKRRGTQAKDLRPIVR
IVDAKGNDLSIPGTDLPAQYLLPPRSIVNLQDGAPVGVGDVVAKIPQEASKTRDITGGLP
RVADLFEARKPKDPAVLAERSGIISFGKDTKGKQRLIIKDTDGSEHEELIPKYRQVIVFE
GEHVTKGETIVDGEPSPQDILRLLGVEPLAAYLVKEIQDVYRLQGVKINDKHIEVITRQM
LRKVEITDQGSSKFLNGEQVERQRVIEENARLSTRNELPARFDPVLLGITKASLATESFI
SAASFQETTRVLTEAAVRGTKDNLRGLKENVIVGRLIPAGTGLSYHSSRRRGATGLTDSE
MQTLAGTPAAVESPVVEAEAEQASGEE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacctgctcaacctcttcaaccagcagcgccagacgctggacttcgacgcgatc
aagatcgcgctggcctcgccggacctgatccgttcgtggtccttcggcgaagtgaagaag
ccggaaaccatcaactaccgtaccttcaagccggaacgcgacggcctgttctgcgccgcc
atcttcggcccggtgaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagcac
cgcggcgtggtctgcgaaaagtgcggtaccgaagtgaccctggccaaggtgcgccgcgag
cgcatgggccacatcgacctggcctcgccggtcgcgcacatctggttcctcaagtcgctg
ccgtcgcgcatcggcctgatgctggacatgaccctgcgcgacatcgagcgcgtgctgtac
ttcgaagcgtacgtggtgaccgagccgggcctgaccgccctggagcgccgccagctgctg
accgaggaacagtacctgcaggcgcgccaggaacacggtgacgacttcgacgccgccatg
ggcgccgaggccgtctacgaactgctgcgcacgatcgacctgcagtcggagatgacccgc
ctgcgcgaggaaatcgccgctaccggttcggaaaccaagctcaagcgcctcaccaagcgc
atcaagctgatcgaagccttcctggaatcgggcaaccgtccggaatggatggtcatgacc
gtgctgccggtgctgccgccggacctgcgtccgctggtcccgctggatggcggccgcttc
gcgacctccgacctgaacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctgcgc
cgcctgctcgaactgagcgcgccggacatcatcgtgcgtaatgaaaagcgcatgctgcag
gaatcggtcgatgcgctgctggacaacggccgccgcggtcgtgccatcaccggcaccaac
aagcgcccgctgaagtcgctggccgacatgatcaagggcaagcagggccgcttccgccag
aacctgctcggcaagcgcgtcgactactcgggccgttcggtcatcgtggtcggcccgtac
ctgcgcctgcaccagtgcggcctgccgaagaagatggcgcttgagctgttcaagccgttc
gtcttcgccaagctgcagcgtcgtggcctggccaccaccatcaaggccgccaagaagctg
gtcgagcgcgaagaagccgaagtctgggacatcctggaagaggtcatccgcgagcatccg
gtgatgctgaaccgtgcgccgaccctgcaccgcctgggcatccaggcgttcgagccggta
ctgatcgagggcaaggccatccagctgcacccgctggtctgcaccgcgttcaacgccgac
ttcgacggtgaccagatggccgtccacgtgccgctctcgctggaagcccagctggaagcg
cgtgcgctgatgatgtcgaccaacaacatcctgtcgccggccaacggcgagccgatcatc
gtgccgtcgcaggacgtcgtgctgggtctgtactacatgacccgctcgctggagaacaag
aagggcgagggcatggccttcgccaacatcgccgaagtcaagcgcgcctacgacaaccgc
gtggtggaactgcacgccaaggtcaaggtccgcatcaccgaggtggtgaccgacgaagac
ggcaacaagcagaacaagacctcgatcgtggacaccacgatcggtcgcgccctgctggct
gaaatcctgccggaaggcctgccgttcgcgctggccaatgtcgagctgaccaagaagaac
atcagccgcctgatcaactccagctaccgccagctcggcctgaaggacacggtcgtgttc
gccgacaagctgatgtacaccggcttcgcctatgcgacccgcgccggcgtctcgatcggc
atcgacgacatgctgatcccggacgagaagaagggcatcctcaccgaggccgaagccgaa
gtgctggaaatccaggagcagtaccagtcgggcctggtcaccgccggcgagcgctacaac
aaggtggtcgacatctggtcgcgcaccaacgagcgcatcgccaaggcgatgatggacacc
atcggtaccgagaaggtcgtcaatgccaagggcgagaccatcgaccagaagtcgatgaac
tcgctgtacatcatggccgactccggtgcgcgtggttcgcaggcgcagatccgtcagctg
gccggcatgcgtggcctgatggcccgcccggacggctcgatcatcgagacgcccatcaag
gcgaacttccgcgaaggcctgaacgtgcaggagtacttcaactccacccacggtgcccgt
aagggtctggccgataccgcgctgaagaccgcgaactcgggttacctgacccgtcgcctg
gtcgacgtggcgcaggacgtggtgatcaccgaagtggattgcggtaccaccgaaggcctg
atcatgaccccgatcgtggaaggcggcgacgtggtcgagccgctgaaggatcgcgtgctg
ggccgcgtggttgccgaggacgtgttcctgccgggcaacgacgaagatccgatcgtcacc
cgcaacaccctgctggacgaagcctgggttgccaagctggaagatgccggcgtgcagacc
atcaaggtccgctcgaccatctcctgtgaatcggccttcggtgtctgctcgcgctgctac
ggccgcgacctggcgcgtggccacctggtcaacatcggtgaagcggtcggcgtcatcgcc
gcccagtccatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggtggt
gcggcgtcgcgagctgctgcggtcgacaacatcaccgtcaagaccaccggctcggtcaag
ttcagcaacctcaagtcggtcgagcacgccaacggctcgctggtggcggtgtcgcgctcg
ggcgaaatctcggtgctcgatgcgcacggccgtgagcgtgagcgttacaagctgccgtac
ggtgcgaccatcacgtccaaggacggtgatgcgatcaaggcgggccagaccgtggccaac
tgggatccgcataaccacccgatcgtgtcggaagtggccggcttcatccgcttcatcgac
ttcgtcgacggcgtcaccgtcatcgagaagaccgacgagctgaccggcctggcctcgcgc
gaaatcaccgatccgaagcgtcgtggtacccaggccaaggacctgcgcccgatcgtgcgc
atcgtcgacgccaagggcaacgacctgtcgatcccgggcaccgacctgccggcgcagtac
ctgctgccgccgcgttcgatcgtcaacctgcaggacggcgccccggtgggcgtgggcgac
gttgtcgccaagatcccgcaggaagcgtcgaagacccgcgacatcaccggtggtctgccg
cgcgtggccgacctgttcgaagcgcgcaagccgaaggatccggcggtgctggccgagcgt
tcgggcatcatcagcttcggcaaggacaccaagggcaagcagcgcctgatcatcaaggac
accgatggttcggagcacgaagagctgatcccgaagtaccgccaggtcatcgtgttcgaa
ggcgagcatgtcaccaagggtgaaaccatcgtggacggcgagccgagcccgcaggacatc
ctgcgcctgctgggtgtcgagccgctggctgcctacctggtcaaggaaatccaggacgtg
taccgcctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcacccgccagatg
ctgcgcaaggtcgagatcaccgaccagggcagcagcaagttcctgaacggcgaacaggtg
gagcgccagcgcgttatcgaggagaatgcgcgcctgtcgacccgcaacgaactgccggcg
cgcttcgatccggtcctgctgggcatcaccaaggcctcgctggcaaccgaatcgttcatc
tcggcggcctccttccaggagaccacccgagtgctgaccgaggctgccgtccgcggtacc
aaggacaacctgcgtggcctgaaggaaaacgtcatcgtcggccgcctgattccggccggt
accggcctgtcctaccacagcagccgccgtcgcggcgcgaccggtctcaccgactcggaa
atgcagaccctggccggcaccccggctgcggtggagtccccggtggttgaagccgaagct
gaacaggcctcgggcgaagaatga
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