Stenotrophomonas sp. Pemsol: PEM_02445
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Entry
PEM_02445 CDS
T10809
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
steo Stenotrophomonas sp. Pemsol
Pathway
steo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
steo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PEM_02445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
steo03021
]
PEM_02445
03400 DNA repair and recombination proteins [BR:
steo03400
]
PEM_02445
Enzymes [BR:
steo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PEM_02445
Transcription machinery [BR:
steo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PEM_02445
DNA repair and recombination proteins [BR:
steo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PEM_02445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
HHH_XRCC3_RpoA
Motif
Other DBs
NCBI-ProteinID:
AYA89674
LinkDB
All DBs
Position
537380..538378
Genome browser
AA seq
332 aa
AA seq
DB search
MTVTANQVLRPRGPQIERLTDTRAKVVIEPLERGYGHTLGNALRRVLLSSIPGFAITEVE
IDGVLHEYTTVEGLQEDVLEVLLNLKDVAIRMHSGDSATLSLSKQGPGVVTAADIKVDHN
VEILNGDHVICHLTKDTAINMRLKIERGFGYQPAAARRRPDEETRAIGRLVLDASFSPVR
RVAYAVEAARVEQRTDLDKLVIDIETNGTIDAEEAVRTAADILSDQLSVFGDFTHRDRGA
AKPANNGVDPVLLRPIDDLELTVRSANCLKAESIYYIGDLIQKTEVELLKTPNLGKKSLT
EIKEVLAQRGLSLGMKLENWPPAGVASHGMLG
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atgacggttaccgccaaccaggttctgcgtcctcgcggtccgcagatcgaacgccttacc
gacacccgtgcaaaggtcgttatcgaacctttggagcggggttacgggcatacgctgggc
aacgccctgcgtcgcgtgctgctgtcgtccatcccgggcttcgccatcacggaagtcgaa
atcgacggcgtgttgcatgagtacaccacggtcgaaggtctgcaggaggacgtcctcgaa
gtcctgctcaacctgaaggatgtggccatccgtatgcactccggcgacagcgccaccctg
tccctgtccaagcagggcccgggcgttgtcaccgctgccgacatcaaggtcgaccacaat
gtggagatcctgaacggcgaccatgtgatctgccacctgaccaaggatacggcgatcaac
atgcgtctgaagatcgaacgtggtttcggctaccagccggctgccgcgcgtcgtcgtccg
gacgaagaaacccgtgccatcggccgcctggtcctggatgcctcgttctcgccggtccgc
cgtgtcgcctatgccgtggaagcggcgcgtgtcgaacagcgcaccgacctggacaagctg
gtcatcgatatcgagaccaacggcaccatcgatgccgaggaagccgtgcgcaccgccgcc
gacatcctcagcgaccagctgtcggtgttcggtgacttcacccaccgcgaccgcggtgcg
gccaagccggccaacaacggcgtggatccggtgctgctgcgcccgatcgacgatctggag
ctgaccgtgcgttcggccaactgcctgaaggctgaaagcatctactacatcggcgatctg
atccagaagaccgaagtggagctgctgaagaccccgaacctgggcaagaagtcgctcacc
gagatcaaggaagtgctggctcagcgcggcctgtcgctcggcatgaagctggagaactgg
ccgccggccggcgtcgccagccacggcatgctgggctga
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