Stenotrophomonas sp. Pemsol: PEM_03265
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Entry
PEM_03265 CDS
T10809
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
steo Stenotrophomonas sp. Pemsol
Pathway
steo02020
Two-component system
steo02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
steo00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PEM_03265
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PEM_03265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
steo03021
]
PEM_03265
Transcription machinery [BR:
steo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PEM_03265
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
HTH_23
Sigma70_r4
MarR_2
HTH_Crp_2
HTH_38
Sigma70_r4_2
HTH_AsnC-type
HTH_24
HTH_29
HTH_28
AbiEi_4
HTH_11
HTH_17
HisKA
PF0610-like_N
HTH_Tnp_ISL3
TetR_N
HTH_20
HTH_5
MarR
Motif
Other DBs
NCBI-ProteinID:
AYA89812
LinkDB
All DBs
Position
complement(710504..711925)
Genome browser
AA seq
473 aa
AA seq
DB search
MKTRLQTSLGQQLVLTPQLQQAIKLLQMSTTELELEIAQAVESNPLLDWADSNDSSAANE
GGDNTDADTPAERADNGDDWAPAELDWSAAGSGGSFDDDDDNGSAAERVAETETLADHLL
WQLHLSHLSSRDRSIGAALIDALDDDGYLREPLATIAETLLPAIHADEDEILAVLHRIQR
FDPVGVAARTLGECLLLQLDVLAGDTPGLILARQIAAGPLERLPRSGVAGLAHELKQPLD
EVETAVALLRSLDPRPGTQIAPLSQDTYVVPDVVVWRQNGIWRAALAAHAGPKVVIHRGY
EQLIRRCGEADAGYLRGQLQEARWLLKGLQQRGETLLRVVRSLIHQQAGFLEFGEQALRP
LTLREIAAELGLHESTVSRAIARKHVRTPRGTLPLRAFFASGIDTEGGGEASSTAIQAMI
RRLIDDENPRKPLSDAKLADLLKSSGIPVARRTVAKYREAMNISASHERVRIA
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgaagactcggctgcagacatcgttgggacagcagctggtgctcaccccccagctgcag
caggcgatcaagctgctgcagatgtccacgaccgagctggagcttgaaatcgcccaggcc
gtggaaagcaatccgctgctggactgggccgacagcaacgacagcagtgccgccaatgaa
ggcggcgacaacacggacgccgacacgccggccgaacgcgccgacaatggcgacgactgg
gcaccggccgagctcgactggagcgctgccggcagtggcggcagcttcgacgatgacgac
gacaacggcagcgctgccgagcgcgtagccgaaaccgaaacactggccgaccatctgctg
tggcagctgcatctgtcgcatctgtcctcgcgtgatcgcagcatcggcgcggcactgatc
gatgcattggacgacgacgggtacctgcgcgagccgctggccaccatcgctgaaaccctg
ttgccggcgatccacgccgacgaggacgagatcctcgccgtgctgcatcgcatccagcgc
ttcgatccggtgggtgtggctgcacgcacgctgggcgaatgcctgctgctgcagctggat
gtgctggccggcgacacgcccggcctgatcctggcgcggcagattgccgcaggccccttg
gaacggttgccgcgcagcggcgtcgccgggcttgcccatgagttgaagcagccgctagac
gaggtcgagactgccgtggcgctgctgcgctcgctggacccgcgcccgggcacgcagatc
gcaccgctttcgcaggatacctacgtggtgcccgacgtggtggtgtggcggcagaacggc
atctggcgcgcggcgctggccgcccatgccgggccaaaggtggtgatccaccgtggctac
gaacagctgatccgccgctgtggcgaggccgacgccggctacctgcgtggccagttgcag
gaggcgcgctggctgctgaagggcctgcagcagcgcggtgaaaccctgctgcgggtggtg
cgcagcctgatccaccagcaggccggtttcctcgagttcggcgaacaggcgctgcgtccg
ctgaccctgcgcgagatcgccgccgaactgggcctgcacgagtcgacggtgtcgcgcgcg
atcgcccgcaagcatgtgcgcacgccgcgcggcacgctgccgctgcgtgccttcttcgcc
tcgggcatcgataccgaaggcggtggcgaggcgtccagcaccgccatccaggcgatgatc
cggcgcctgatcgacgacgaaaacccgcgcaagccgctttctgacgccaagctggctgac
ctgctcaaatcgtcgggaattccagtagcgcgacgcaccgtggcgaagtatcgtgaagcc
atgaacatctccgcctcgcacgaaagggtcagaatcgcttga
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