Stenotrophomonas sp. Pemsol: PEM_04175
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Entry
PEM_04175 CDS
T10809
Name
(GenBank) DNA repair protein RadA
KO
K04485
DNA repair protein RadA/Sms
Organism
steo Stenotrophomonas sp. Pemsol
Brite
KEGG Orthology (KO) [BR:
steo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
steo03400
]
PEM_04175
DNA repair and recombination proteins [BR:
steo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
PEM_04175
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATPase
AAA_25
Zn_ribbon_LapB
ChlI
DnaB_C
GvpD_P-loop
AAA_22
AAA_16
SLFN-g3_helicase
Lon_C
DUF7125
AAA_24
AAA_30
nSTAND3
AAA_33
AAA
PAXNEB
Zn_ribbon_8
RecA
Rad51
zf-C2H2_6
NACHT
NTPase_1
MCM
DAP3
GvpD_bR2
Motif
Other DBs
NCBI-ProteinID:
AYA89984
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Position
900288..901664
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AA seq
458 aa
AA seq
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MAKARTAYVCNECGAEFSKWQGQCTECNAWNSLSEIVLESAAAAKAPASRRAGWAGKIDT
PKITALKDVEQTEHRRVSTGIGEFDRVLGGGLVEGAVVLVGGDPGIGKSTLLLQAVAKMA
AELPVLYVTGEESLAQVAGRAHRLELPLDGVNALAETGVESILQHASRAGPRLIVADSVQ
TLWTESLTAAPGSVSQVRESAARLVRFAKETGTAVFLVGHVTKEGGIAGPRVLEHMVDAV
LYFEGESGSRFRLLRAFKNRFGAVNELGVFAMGDKGLKEVSNPSAIFLSGGSTHQPGSCV
MVTREGTRPLLVEVQALVDASPLSNPRRVAVGLEQNRLAMLLAVLHRHGGVLVGDQDVFV
NVVGGIRVQETAADLPVLLAVLSSLQDRPLAEKTIAFGEVGLSGEIRPVPNGEDRLREAA
THGFKRAIVPKANAPKGGSVKGMEVIAVERLSEAIDAA
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atggccaaagcccgcaccgcctacgtctgcaatgaatgcggcgccgaattcagcaaatgg
cagggccagtgcacggagtgcaacgcctggaactcgctgtctgaaatcgtgctggagagc
gcggcggcggccaaggcaccggcgtcgcggcgggcgggctgggccggcaagatcgatacg
ccgaagatcaccgcgctgaaggacgtggagcagaccgagcatcgccgggtctccactggc
atcggcgagttcgaccgcgtgctgggtggtggcctggtcgaaggcgcggtggtgctggtg
ggcggcgacccgggtatcggcaagtcgacgctgctgctgcaggcggtggcgaagatggcg
gccgaactgccggtgctgtacgtcaccggtgaagagtcgctggcccaggtggccggccgc
gcgcaccgcctggagctgccactggacggggtcaacgcgctggccgagaccggggtcgag
tcgatcctgcagcatgcctccagggctgggccgcggctgatcgtggccgattcggtgcag
accctgtggaccgagagcctgaccgctgcgccgggttcggtcagccaggtgcgcgagagt
gcggcgcggctggtgcggttcgccaaggagaccggcactgccgtgttcctggtcggccac
gtgaccaaggagggtggcatcgccggcccgcgcgtgctggaacacatggtcgacgcggtg
ctgtacttcgagggcgagagcggcagccgcttccgcctgttgcgcgcgttcaagaaccgc
ttcggtgcggtcaacgaactgggtgtgttcgcgatgggcgacaagggcctgaaggaggtc
tccaacccttcggcgatcttcctctccggcggcagcacccaccagccgggcagctgcgtg
atggtcacccgcgagggcacacggccgctgctggtggaggtacaggcgctggtcgatgca
tcgccgctgtcgaacccgcgccgtgtcgcggtcggcctggagcagaaccgcctggcgatg
ctgctggcggtgctgcatcgccatggcggcgtactggtcggcgaccaggacgtgttcgtc
aatgtggtcggtggcatccgcgtgcaggagactgccgccgatctgccggtgctgctggcg
gtgttgtcgtcgctgcaggatcggccgctggcggagaagaccatcgccttcggtgaagtg
ggcctgtccggcgagatccgcccggtgcccaatggcgaagaccgcctgcgcgaggccgcc
acccatggtttcaagcgcgccatcgtgcccaaggccaatgcgcccaagggcggttcggtg
aaaggcatggaggtgatcgcggtggaacgcctgtccgaggccatcgacgcggcgtga
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