Stenotrophomonas sp. Pemsol: PEM_04495
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Entry
PEM_04495 CDS
T10809
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
steo Stenotrophomonas sp. Pemsol
Pathway
steo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
steo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PEM_04495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
steo03400
]
PEM_04495
Enzymes [BR:
steo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PEM_04495
DNA repair and recombination proteins [BR:
steo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PEM_04495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_30
Cas3-like_C_2
SWI2_SNF2
ERCC3_RAD25_C
RecG_dom3_C
LcrG
Motif
Other DBs
NCBI-ProteinID:
AYA90043
LinkDB
All DBs
Position
complement(980238..983702)
Genome browser
AA seq
1154 aa
AA seq
DB search
MSRTSYPAPPLPRAGQLRAWWRAPASPTALAWYLAQASRVHDAPLLVIARDNHGANQLEA
DLQTLLGGDPALPVVAFPDWETLPYDRFSPHPDIISQRLAALHRLPTLKRGLVIVPVQTL
LQQLAPRSYVIGGSFDLKVGQRLDLEAEKRRLESAGYRNVPQVMDPGDFAVRGGLLDVFP
MGADEPLRVELLDEDIDSIRAFDPESQRSLDKVEAVHMLPGREVPMDEASIARVLSTLRE
RFDVDTRRSALYQDLKSGLAPAGVEYYLPLFFERTATLFDYLPSGSLPVVCAGAGEAAEA
FWAQTGERYEQRRHDVERPLLPPSALYLSPELLRERLNDAPRIEVWAADHARIADAHALG
DQPLPPLPVAAREAPAGDALKSFLGHYPGRVLIAADSPGRREALLEVLQAAELKPPVVAD
LPSFLASDARFAIAVAPLEDGFALDDPRIAVLTERQLFPERAGSTRRTRRAGREPEAIIR
DLGELTEGAPIVHEDHGVGRYRGLIAMDVGGMPGEFLDIEYAKGDRLYVPVAQLHLISRY
SGASAETAPLHSLGGEQWSKAKRKAAEKVRDVAAELLEIQARRQARAGLALQVDRAMYEP
FAAGFPFEETPDQLAAIDATLRDLASSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQV
AVLVPTTLLAEQHYRNFRDRFADYPLKVEVLSRFKTSKEIKAELEKVAAGTIDVIVGTHR
LLQPDVKFKDLGMVIVDEEQRFGVRQKEALKALRANVHLLTLTATPIPRTLNMAMAGLRD
LSIIATPPPNRLAVQTFITQWDNALLREAFQRELARGGQLYFLHNDVESIGRMQRELSEL
VPEARIGIAHGQMPERELEKVMLDFQKQRFNVLLSTTIIESGIDIPNANTIIINRADRFG
LAQLHQLRGRVGRSHHRAYAYLITPDRRAITPDAEKRLEAIASMDELGAGFTLATHDLEI
RGAGELLGEDQSGQMAEVGFSLYTELLERAVRSIKQGKLPDLDAGEEVRGAEVELHVPAL
IPEDYLPDVHTRLTLYKRISSARDSDALRELQVEMIDRFGLLPDAAKHLFAIAELKLKAN
TLGIRKLDLGENGGRIVFESKPNIDPMVVIQLIQKQPNLYAMEGPDKLRIKHPLPLPEDR
FNAARALLTTLAPG
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgtacctcataccccgccccgccgctgccgcgcgccggccagctccgcgcctgg
tggcgcgcccccgcctcgcccaccgcactggcctggtacctggcccaggcatcgcgcgtg
cacgacgctccgctgctggtgatcgcccgtgacaaccacggcgcaaaccagcttgaagcc
gatctgcagaccctgctcggcggtgacccggccctgccggtggtcgccttcccggactgg
gaaaccctgccctacgaccgcttcagcccgcatccggacatcatctcgcagcgtctggct
gccctgcaccgcctgcccacgctgaagcgtggcctggtgatcgtgccggtgcagaccctg
ctgcagcagctggccccgcgcagctacgtcattggtggcagcttcgacctgaaggtcggc
cagcgcctggatctggaagccgagaagcgccgcctggaaagcgccggctaccgcaacgtg
ccgcaggtgatggacccgggtgacttcgccgtgcgcggcggcctgctcgacgtgttcccg
atgggcgccgacgagccgctgcgggtggaactgctggacgaggacatcgattcgatccgt
gccttcgatccggaaagccagcgttcgctggacaaggtcgaggcggtgcacatgctgccg
ggccgcgaagtgcccatggacgaggccagcatcgcccgcgtgctgtccacgctgcgcgag
cgcttcgatgtcgatacccggcgcagcgcgctgtaccaggacctgaaatccgggctggcc
ccggccggcgtcgagtactacctgccgctgttcttcgagcgcaccgcaaccctgttcgac
tacctgcccagcggcagcctgccggtggtctgtgccggtgccggcgaagccgccgaggcg
ttctgggcgcagaccggcgagcgttatgagcagcgccgccacgatgtggaacggccgctg
ctgccgccgtcggcgctgtacctgtcgccggagctgctgcgcgagcgcctgaacgatgcc
ccgcgcatcgaggtatgggccgccgaccacgcacgcatcgccgacgcgcacgcgctgggc
gaccagccgctgcccccgctgccggtggccgcacgcgaagctcccgccggcgatgcgctg
aaatccttcctcggccattatccgggccgggtactgatcgccgccgattcgcccggccgc
cgcgaggcactgctggaagtgctgcaggccgccgagctgaagccgccggtggtggccgac
ctgcccagcttcctcgctagcgatgcgcgcttcgcgatcgcggtggcgccgctggaagat
ggcttcgcgctggacgacccgcgcatcgcggtgctgaccgagcgccagctgttccccgag
cgcgccggcagcacccgccgcacgcgccgtgccggccgcgagccggaggcgatcatccgc
gacctcggcgagctgaccgagggtgcgccgatcgtgcacgaggaccatggcgtcggccgc
taccgtggcctgatcgcgatggacgtcggcggcatgcccggcgagttcctcgacatcgaa
tatgccaagggcgaccgcctgtatgtaccggtcgcccagctgcacctgatcagccgctac
tccggtgcttcggcggaaaccgcaccgctgcattcgctcggtggcgagcagtggagcaag
gccaagcgcaaggccgccgagaaggtgcgcgatgtcgccgccgaactgctggaaatccag
gcccgccgccaggcgcgtgccggcctggcactgcaggtcgaccgcgcgatgtacgagccg
ttcgccgccggtttcccgttcgaggaaacccccgaccagctggctgcgatcgatgccacc
ctgcgcgacctggccagcagccagccgatggaccgcgtggtctgcggcgacgtcggcttc
ggcaagaccgaggtggcggtgcgcgctgcatttgctgcggccagtgccggcaagcaggtg
gcggtgctggtgccgaccacgctgctggccgagcagcattaccgcaacttccgcgaccgt
ttcgccgattacccgctgaaggtcgaagtgctgtcgcgcttcaagaccagcaaggaaatc
aaggccgaactggagaaggtggccgctggcaccatcgacgtcatcgtcggcacccatcgc
ctgctgcagcctgacgtgaagttcaaggacctgggcatggtcatcgtcgacgaggagcag
cgattcggcgtgcgccagaaggaggcgctgaaggcgctgcgcgccaacgtacacctgctg
acgctgaccgccacgccgatcccgcgcacgctcaacatggccatggccggcctgcgcgat
ctgtcgatcatcgccacgccgccgccgaaccggctggcggtgcagaccttcatcacccag
tgggacaacgcgctgctgcgcgaagccttccagcgcgagctcgcgcgcggtggccagctg
tacttcctgcacaacgatgtggagagcatcggccgcatgcagcgcgagctgtccgagctg
gtgccggaggcacgcatcggcatcgcccacgggcagatgcccgagcgcgaactggaaaag
gtgatgctggatttccagaagcagcgtttcaacgtgctgctgtcgaccacgatcatcgaa
tcgggcatcgacatccccaacgccaacaccatcatcatcaaccgtgccgaccgtttcggc
ctggcccagctgcaccagctgcgtggccgcgtgggccgttcgcaccaccgtgcctacgcc
tacctgatcacccccgaccgtcgcgcgatcacccccgacgccgagaagcgcctggaagcg
atcgcctcgatggacgagctgggcgccggcttcaccctggccacgcacgatctggaaatc
cgcggcgccggtgaactgctgggcgaggaccagagcgggcagatggccgaggtcggcttc
agcctgtataccgagctgctggaacgcgcggtacgcagcatcaagcagggcaagctgccc
gacctggatgccggtgaggaagtgcgcggcgccgaggtcgagctgcatgtgccggcgctg
atcccggaagactacctgccggacgtgcacacccgcctcaccctgtacaagcgtatttcc
agcgcgcgcgacagcgatgcgctgcgcgagctgcaggtggagatgatcgaccgcttcggc
ctgctgccggatgcagccaagcacctgttcgccatcgccgagctgaagctgaaagccaat
acgctgggcatccgcaagctcgacctgggcgagaacggcggccgcatcgtgttcgagtcc
aagccgaacatcgatccgatggtggtgatccagctgatccagaaacaaccgaacctctat
gccatggaagggcccgacaagctgcgcatcaagcacccgctgccgttgccggaagaccgc
ttcaacgcggcccgcgcccttctgaccaccctcgccccgggttga
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