Stenotrophomonas sp. Pemsol: PEM_04585
Help
Entry
PEM_04585 CDS
T10809
Name
(GenBank) DNA methylase
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
steo Stenotrophomonas sp. Pemsol
Pathway
steo03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
steo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PEM_04585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
steo03000
]
PEM_04585
03400 DNA repair and recombination proteins [BR:
steo03400
]
PEM_04585
Enzymes [BR:
steo01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
PEM_04585
Transcription factors [BR:
steo03000
]
Prokaryotic type
Helix-turn-helix
AraC family
PEM_04585
DNA repair and recombination proteins [BR:
steo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PEM_04585
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HhH-GPD
HTH_AraC
CobS_N
Motif
Other DBs
NCBI-ProteinID:
AYA90061
LinkDB
All DBs
Position
complement(1002312..1003790)
Genome browser
AA seq
492 aa
AA seq
DB search
MDTALALDTAACDRARLARDARFDGVFFTAVRSTGIYCRPVCPAPPPKPRNITYFPTAAA
AAAAGYRPCLRCRPELAPQAQQALAGQTVQRALALIHGGFLQEQPVADLATKLGLSARQL
QRLFVEHLGATPGQIHATHRLLLAKQLLTETTLAVTDVALAAGYNSLRRFNTAFLQGCGM
APTALRRQHQPLAADDGGLVLRLGYRPPLDFPRMLAFLRKRSLPGIELIGEDSYQRVLGT
PERPTLLRVTADPKRPELRLQLGAVDPRLIPDIVRRVRRVFDLDADLQQVHAALGEEPLL
ARGIAERPGLRVPGGWDGFEVGVRAVLGQQVSVAAATTFARRLVDAYGAHLPGMPSEFDR
QFPAPEVLAEAPLESIGLPRSRAATVRALAAACASGRLDFGPGQALEEFVARCVALPGIG
PWTAQYIALRGLGQPDAFPAGDLVLQQVLGHAQGQRLSERATEARSQPWRPWRAYAVLHL
WHLSGTFVGEPT
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atggacaccgccctcgccctcgacaccgccgcctgcgaccgcgcccgcctggcccgcgac
gcacgcttcgacggcgtgttcttcaccgccgtgcgcagcaccggcatctattgccgcccg
gtgtgcccggcaccgccgccgaagccgcgcaacatcacctactttccgaccgccgcggcc
gctgcggccgccgggtaccgcccctgcctgcgctgccgcccggaattggcaccgcaggcc
cagcaggccctggccggacagaccgtgcagcgggcactggcgctgatccacggcggcttc
ctgcaggagcagccggtggccgatcttgcaacgaagctcggcctcagcgcgcgccaactg
cagcgcctgttcgtcgaacatctcggcgcaacgcccgggcagatccacgcaacccatcgc
ctgttgctggccaaacagttgctgaccgaaaccacgctggcggtgaccgacgtcgcgctg
gctgccggctacaacagcctgcgccgcttcaataccgcgttcctgcagggctgtgggatg
gcgccgaccgccctgcgtcgccagcatcaaccgttggctgcagatgatggcggcctggtg
ctgcgcctgggctaccgtccaccactggacttcccacgcatgctggccttcctgcgcaaa
cgcagcctgcccggcatcgaactgatcggcgaagacagctaccagcgcgtgctgggcacg
cctgaacgccccaccctgctgcgcgtcaccgccgacccgaagcgcccggagctgcgcctg
caactgggcgcggtggatccacgcctgatccccgacatcgtgcgccgcgtgcgtcgggtg
tttgatctggatgccgacctgcagcaggtccatgccgcgctgggcgaagaaccgctgctc
gcgcgtggcatcgccgaacgccccggactgcgcgtacccggcggctgggatggtttcgag
gtgggcgtacgcgcggtgctcgggcagcaggtcagcgtggccgcggccaccaccttcgcg
cggcgcctggtcgatgcctacggcgcacacctgccgggcatgccatcggaattcgatcgc
cagttccccgcgcccgaggtactggccgaggcaccattggaatccatcgggctgccgcgc
agccgcgccgccaccgtgcgcgccctggccgccgcctgcgccagcggccggctcgacttc
gggcccggccaggccttggaggaattcgttgcgcgctgcgttgcactgcccggcatcggc
ccctggaccgcgcagtacatcgccctgcgtggcctcggccagcccgatgccttcccggcc
ggcgaccttgtgctgcagcaggtgctcggccatgcgcagggccagcgcctgagcgaacgc
gcaaccgaagcgcgctcgcaaccgtggcggccgtggcgcgcctacgcggtgctgcacctg
tggcacctgtccgggacgttcgttggagaaccgacatga
DBGET
integrated database retrieval system
