Stenotrophomonas sp. Pemsol: PEM_04620
Help
Entry
PEM_04620 CDS
T10809
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
steo Stenotrophomonas sp. Pemsol
Pathway
steo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
steo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PEM_04620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
steo03019
]
PEM_04620
03009 Ribosome biogenesis [BR:
steo03009
]
PEM_04620
Enzymes [BR:
steo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PEM_04620
Messenger RNA biogenesis [BR:
steo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PEM_04620
Ribosome biogenesis [BR:
steo03009
]
Prokaryotic type
rRNA helicases
PEM_04620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DUF6702
Motif
Other DBs
NCBI-ProteinID:
AYA90068
LinkDB
All DBs
Position
1008138..1010093
Genome browser
AA seq
651 aa
AA seq
DB search
MSQDSQAPLQFAQLGLSEPVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKT
AAFALPVLSNIDLQQIKPQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQ
QLSALRRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKL
PEQRQVALFSATMPPQIRRIAQTYLQDPVEVTIAAKTTTSANIRQRYWWVSGMHKLDALT
RILEVEPFDAMIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKLD
ILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFATPREKGML
RQIERATRQPIEEMQLPSVEAVNDTRINKFTSRITETLGAGGLDFYRQLLERFENEQNVP
AIEIAAALARMLQGDTPFLLQPPVRAPREERAPRERFDRGDRPERGDRFDRNERGPRFER
GPRRDDAEGGFEPRPRREVPPRGAPEQGMETYRISVGHQHGVKPANIVGAIANEAGLESR
FIGRIDIHDDFSLLDLPAQMPPDVLSHLQKVWVSGQQLQMRPLAAGEEINPAPRPFKPRF
DKRGPGGPGGPRRGGPGGPGGPGGHGGDRGGDRDSRPPRRDGFKPRGPRSF
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaagattcccaagcgccgctgcagttcgcgcagctcggcctgtccgagcccgtg
atgcaggcggtcaccgccatcggctacgaaaccccgtcgccgatccaggccgccaccatc
ccggcgatgctggaaggccgcgacgtgctgggccaggcccaaactggtaccggcaagacc
gctgcgttcgcactgccggtactgtccaacatcgacctgcagcagatcaagccccaggcc
ctgatcctggcgccgacccgcgagctggccatccaggttgccgaggcattccagtcctat
tcgtcgaagatcccgggcttccgcgtgctgccggtgtacggcggccagccgtacggccag
cagctgtcggccctgcgccgtggcgtgcacatcgtggtcggtactcccggccgcgtgatc
gatcacctggaccgcagcaccctggacctgtccgagctgaagaccctggtgctggacgaa
gccgatgaaatgctgcgcatgggcttcatcgacgatgtcgaagcggtgctgaagaagctg
ccggagcagcgccaggtggccctgttctcggccaccatgccgccgcagatccgccgcatc
gcgcagacctacctgcaggacccggtggaagtgaccatcgcggccaagaccaccacctcg
gccaacatccgccagcgctactggtgggtgagcggcatgcacaagctggacgcgctgacc
cgcatcctggaagtcgagccgttcgacgcgatgatcatcttcgcgcgcaccaaggccggc
accgaagaactggccagcaagctgcaggcgcgtggcctggccgctgccgccatcaacggt
gacatgcagcaggcccagcgcgagcgcaccattgccatgctgaaggaaggcaagctggac
atcctggtcgccaccgacgtggccgcccgcggcctggacgtggagcgcatcagccacgtg
ctgaactacgacatcccgtacgacaccgagagctacgtgcaccgcatcggccgtaccggc
cgtgccggccgcagcggcgaggcgatcctgttcgccaccccgcgcgagaagggcatgctg
cgccagatcgagcgcgccacccgccagccgatcgaagagatgcagctgccgagcgtggaa
gcggtcaacgacacccgcatcaacaagttcacctcgcgcatcaccgaaacgctcggcgcc
ggcggcctggacttctaccgccagctgctggagcgcttcgagaacgagcagaacgtgccg
gccatcgagatcgccgccgcgctggcccggatgctgcagggcgataccccgttcctgctg
cagccgccggtgcgtgccccgcgtgaagagcgcgcgccgcgcgagcgcttcgaccgtggt
gaccgcccggagcgtggcgatcgcttcgaccgcaacgagcggggtccgcgcttcgagcgt
ggcccgcgtcgcgacgacgccgaaggtggtttcgagccgcgtccgcgccgcgaggttccg
ccgcgtggtgcgccggagcagggcatggagacctaccgcatttcggtcggccaccagcac
ggcgtgaagccggccaacatcgtcggcgccatcgccaacgaagccggcctggaaagccgt
ttcatcggccgcatcgacatccacgacgacttctcgctgctggacctgccggcacagatg
ccgccggacgtgctgtcgcacctgcagaaggtgtgggtgtccggccagcagctgcagatg
cgaccgctggcggccggtgaagagatcaacccggccccgcgtccgttcaagccgcgcttc
gacaagcgtggtccgggcggccccggtggcccgcgtcgtggtggtccgggtggtccgggt
ggtccgggtggccatgggggcgaccgcggcggtgaccgcgacagccgcccgccacgtcgt
gatggcttcaagccgcgcggcccgcgcagcttctaa
DBGET
integrated database retrieval system
