Stenotrophomonas sp. Pemsol: PEM_04620
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Entry
PEM_04620 CDS
T10809
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
steo Stenotrophomonas sp. Pemsol
Pathway
steo03018
RNA degradation
Brite
Enzymes [BR:
steo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PEM_04620
Messenger RNA biogenesis [BR:
steo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PEM_04620
Ribosome biogenesis [BR:
steo03009
]
Prokaryotic type
rRNA helicases
PEM_04620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
AYA90068
LinkDB
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Position
1008138..1010093
Genome browser
AA seq
651 aa
AA seq
DB search
MSQDSQAPLQFAQLGLSEPVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKT
AAFALPVLSNIDLQQIKPQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQ
QLSALRRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKL
PEQRQVALFSATMPPQIRRIAQTYLQDPVEVTIAAKTTTSANIRQRYWWVSGMHKLDALT
RILEVEPFDAMIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKLD
ILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFATPREKGML
RQIERATRQPIEEMQLPSVEAVNDTRINKFTSRITETLGAGGLDFYRQLLERFENEQNVP
AIEIAAALARMLQGDTPFLLQPPVRAPREERAPRERFDRGDRPERGDRFDRNERGPRFER
GPRRDDAEGGFEPRPRREVPPRGAPEQGMETYRISVGHQHGVKPANIVGAIANEAGLESR
FIGRIDIHDDFSLLDLPAQMPPDVLSHLQKVWVSGQQLQMRPLAAGEEINPAPRPFKPRF
DKRGPGGPGGPRRGGPGGPGGPGGHGGDRGGDRDSRPPRRDGFKPRGPRSF
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaagattcccaagcgccgctgcagttcgcgcagctcggcctgtccgagcccgtg
atgcaggcggtcaccgccatcggctacgaaaccccgtcgccgatccaggccgccaccatc
ccggcgatgctggaaggccgcgacgtgctgggccaggcccaaactggtaccggcaagacc
gctgcgttcgcactgccggtactgtccaacatcgacctgcagcagatcaagccccaggcc
ctgatcctggcgccgacccgcgagctggccatccaggttgccgaggcattccagtcctat
tcgtcgaagatcccgggcttccgcgtgctgccggtgtacggcggccagccgtacggccag
cagctgtcggccctgcgccgtggcgtgcacatcgtggtcggtactcccggccgcgtgatc
gatcacctggaccgcagcaccctggacctgtccgagctgaagaccctggtgctggacgaa
gccgatgaaatgctgcgcatgggcttcatcgacgatgtcgaagcggtgctgaagaagctg
ccggagcagcgccaggtggccctgttctcggccaccatgccgccgcagatccgccgcatc
gcgcagacctacctgcaggacccggtggaagtgaccatcgcggccaagaccaccacctcg
gccaacatccgccagcgctactggtgggtgagcggcatgcacaagctggacgcgctgacc
cgcatcctggaagtcgagccgttcgacgcgatgatcatcttcgcgcgcaccaaggccggc
accgaagaactggccagcaagctgcaggcgcgtggcctggccgctgccgccatcaacggt
gacatgcagcaggcccagcgcgagcgcaccattgccatgctgaaggaaggcaagctggac
atcctggtcgccaccgacgtggccgcccgcggcctggacgtggagcgcatcagccacgtg
ctgaactacgacatcccgtacgacaccgagagctacgtgcaccgcatcggccgtaccggc
cgtgccggccgcagcggcgaggcgatcctgttcgccaccccgcgcgagaagggcatgctg
cgccagatcgagcgcgccacccgccagccgatcgaagagatgcagctgccgagcgtggaa
gcggtcaacgacacccgcatcaacaagttcacctcgcgcatcaccgaaacgctcggcgcc
ggcggcctggacttctaccgccagctgctggagcgcttcgagaacgagcagaacgtgccg
gccatcgagatcgccgccgcgctggcccggatgctgcagggcgataccccgttcctgctg
cagccgccggtgcgtgccccgcgtgaagagcgcgcgccgcgcgagcgcttcgaccgtggt
gaccgcccggagcgtggcgatcgcttcgaccgcaacgagcggggtccgcgcttcgagcgt
ggcccgcgtcgcgacgacgccgaaggtggtttcgagccgcgtccgcgccgcgaggttccg
ccgcgtggtgcgccggagcagggcatggagacctaccgcatttcggtcggccaccagcac
ggcgtgaagccggccaacatcgtcggcgccatcgccaacgaagccggcctggaaagccgt
ttcatcggccgcatcgacatccacgacgacttctcgctgctggacctgccggcacagatg
ccgccggacgtgctgtcgcacctgcagaaggtgtgggtgtccggccagcagctgcagatg
cgaccgctggcggccggtgaagagatcaacccggccccgcgtccgttcaagccgcgcttc
gacaagcgtggtccgggcggccccggtggcccgcgtcgtggtggtccgggtggtccgggt
ggtccgggtggccatgggggcgaccgcggcggtgaccgcgacagccgcccgccacgtcgt
gatggcttcaagccgcgcggcccgcgcagcttctaa
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