Stenotrophomonas sp. Pemsol: PEM_04765
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Entry
PEM_04765 CDS
T10809
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
steo Stenotrophomonas sp. Pemsol
Pathway
steo03030
DNA replication
steo03430
Mismatch repair
steo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
steo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PEM_04765
03430 Mismatch repair
PEM_04765
03440 Homologous recombination
PEM_04765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
steo03032
]
PEM_04765
03400 DNA repair and recombination proteins [BR:
steo03400
]
PEM_04765
Enzymes [BR:
steo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PEM_04765
DNA replication proteins [BR:
steo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PEM_04765
DNA repair and recombination proteins [BR:
steo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PEM_04765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
Ferredoxin_N
Motif
Other DBs
NCBI-ProteinID:
AYA90097
LinkDB
All DBs
Position
complement(1041728..1045321)
Genome browser
AA seq
1197 aa
AA seq
DB search
MSNSRFVHLHVHTEFSLADSTIRVPAKPDQADPKKAKQANLLSRSVELGLPALAVTDLNN
LFALVKFYKAAEGVGIKPIAGADVLIAEEGQDPWRMTLLCRDREGYLSLSRLLTRAWMEG
HRPEGGVAIHPDWLKAGNANLFALAGRQSLAGRLALDGKHELAEQQLADWQRVFGDGLHL
ELTRTGREGEETFNQFALMAAGQRGLPVVASNDVRFLSPSDFSAHEARVCISTGRVLDDP
KRPREYSDQQYLKSAEEMCALFADIPDAIDNTLALAERCNIEMRLGTYFLPNYPVPDDET
LDTWIQKMSRDGLEERLEKNPLAPGKTREEYFERLEFELNTIIKMGFPGYFLIVADFIQW
GKNQGIPIGPGRGSGAGSLVAWALKITDLDPLPYNLLFERFLNPERVSMPDFDIDFCMDR
RDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDSGRVLGFPYGLVDGVSKLIPNILGIH
LKDALGKGKEGPSSEMASPELIQRYETEDDVRDLIDLALQLEDLTRNAGKHAGGVVIGPE
PLSEFCPLYAEHDENGLGKNPVTQFDKNDVEEVGLVKFDFLGLRTLTIIDWAVKAINKRH
ERAGIPPVDIAAIPLDDAPTYKDIFANGNTGAVFQFESSGMRRLLKDARPDRFEDLIALV
SLYRPGPMDLIPSFNARKHGQEEIIYPDPRTEAILKDTYGIMVYQEQVMQMAQIVGGYSL
GGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVDGPKADEIFDLMEKFAGYGFNKSHAA
AYALVSYQTAWLKRHYPAEFMAATLSSDLDNTDKVVGFLDEVRNLGLTVLPPKVNQSAFM
FEAVTPDTIQYGLGAIKGVGQGACEAVVEERLKGGPFKDLLDFCTRVGSAKLNRRTLEAM
INCGALDELGRNRASLMLQLPEVIKATDQMARERASGQNSLFGGPDPSTVSIQLDLPEAE
EWPLLQRLNGERDTLGFYLSGHPFDPWRDDVRDLVGNDLGSVEKIWSANSGGGGGGGEKR
WRPEVQTVLAGQVVGVRRKGESQIFIQLEDGRGRVECSAFSDAMAEFGHLMTKDRILVVK
GGLREDEFNGGYALRIRQCWDFDEVCANYATRLSLRLDLRQQRPVWERINALLDRHRPGR
TPLRLDLLLKGPHGGVAGMLDVSGQSAVRIDSKLMEALRADPAVRTLKVRYSPPWAS
NT seq
3594 nt
NT seq
+upstream
nt +downstream
nt
atgtccaactcccgcttcgtacatctccacgtccacaccgagttctcgctggcggactcg
accatccgcgtgccggccaagccggaccaggcggacccgaagaaggccaagcaggccaac
ctgctgtcgcgctcggtggagctcggcctgcccgcgctggcggtgaccgatctcaacaac
ctgttcgccctggtcaagttctacaaggcggccgaaggcgtgggcatcaagccgatcgcc
ggtgccgacgtgctgatcgccgaggaaggccaggacccgtggcggatgaccctgctgtgc
cgcgaccgcgagggctacctgagcctgtcgcggctgctgacccgcgcctggatggaaggc
catcgcccggaaggcggtgtggccatccacccggactggctgaaggccggcaacgccaac
ctgttcgcgctggccggccggcagagcctggccgggcgcctggcactggacggcaagcat
gaactggccgagcagcagctggccgactggcagcgcgtattcggcgatggcctgcacctg
gagctgacccgtaccggccgcgagggcgaggaaaccttcaaccagttcgcgctgatggcc
gctggccagcgcggcctgccggtggtggccagcaacgacgtgcgcttcctgtcgccgtcg
gatttcagcgcgcacgaagcgcgcgtgtgcatttccaccggccgcgtgctggacgatccc
aagcgtccgcgcgagtacagcgaccagcagtacctgaagtcggccgaggagatgtgcgcg
ctgttcgccgacatccccgatgcgatcgacaacacgctggcgctggccgagcgctgcaac
atcgagatgcggctgggcacctacttcctgcccaactacccggtgcccgacgacgagacc
ctggacacctggatccagaagatgtcgcgcgacggcctggaagagcgcctggagaagaat
ccgctggcgccgggcaagacccgtgaggagtacttcgagcgcctggagttcgagctcaac
accatcatcaagatgggcttccccggctacttcctgatcgtggccgacttcatccagtgg
ggcaagaaccagggcattccgatcggtcccggccgtggttcgggtgccggttcgctggtg
gcatgggcgctgaagatcaccgacctggacccgctgccgtacaacctgctgttcgagcga
ttcctcaatcccgaacgcgtgtcgatgcccgacttcgacatcgacttctgcatggaccgc
cgcgacgaggtgatcgactacgtcgcccgcaagtacgggcgcgagcgcgtcagccagatc
atcacctacggcaccatggccgccaaggcggtggtgcgcgactccggccgcgtgctcggg
ttcccgtacggcctggtggatggcgtttccaagctgatccccaacatcctgggcatccac
ctgaaggatgcgctgggcaagggcaaggaaggcccgagctcggaaatggcctcgccggaa
ctgatccagcgctacgagaccgaggacgatgtccgcgacctgatcgacctggcgctgcaa
ctggaagacctgacccgcaacgccggcaagcacgctggtggcgtggtgatcgggcccgag
ccgctgagcgagttctgcccgctgtacgcagaacacgacgaaaatgggctcggcaagaac
ccggtcacccagttcgacaagaacgacgtggaagaagtgggcctggtgaagttcgacttc
ctcggcctgcgcacgctgaccatcatcgactgggcggtgaaggcgatcaacaagcgccac
gaacgcgcgggcattccgccggtcgacattgccgcgatcccgctcgacgatgcgcccacc
tacaaggacatcttcgccaatggcaacaccggcgcggtgttccagttcgaatcctcgggc
atgcgccgcctgctgaaggacgcgcgccccgaccgcttcgaagacctgatcgcgctggtg
tcgctgtatcgccccggcccgatggacctgattccctccttcaacgcgcgcaagcacggc
caggaagaaatcatctatcccgatccgcgcaccgaagcgatcctgaaggacacctacggc
atcatggtgtaccaggagcaggtgatgcagatggcgcagatcgtcggcggctactcactg
ggcggcgctgacctgctgcgacgcgcgatgggcaagaaggtgccggcggaaatggccaag
caccgcgagatcttccgcgaaggcgcagccaagggcggcgtcgacggccccaaggccgac
gaaatcttcgacctgatggagaagttcgccggctatggcttcaacaagtcgcacgccgct
gcatacgcactggtcagctaccagaccgcctggctgaagcgccattacccggccgagttc
atggcggccacgctgtcttcggacctggacaacaccgacaaggtggtcggcttcctcgac
gaggtgcgcaacctcggcctgaccgtgctgccgccgaaggtgaaccagtcggccttcatg
ttcgaagcggtcacaccggacacgatccagtacggcctgggcgcgatcaagggcgtcggc
cagggcgcctgcgaagcggtggtcgaggaacgactgaagggcggaccgttcaaggatctg
ctggacttctgcacccgcgtcggctcggccaagctcaaccggcgcacgttggaagcgatg
atcaactgtggcgcgctcgatgagctcggccgcaaccgtgcctcgctgatgctgcagctg
ccggaagtgatcaaggccaccgaccagatggcacgcgagcgtgcgtccgggcagaattcg
ctgtttggcgggcccgatccgagcaccgtgtcgatccagctggacctgcccgaagccgaa
gaatggccgctgctgcagcgcctcaacggcgagcgcgacacgctgggcttctacctcagc
ggccacccgttcgatccctggcgcgacgatgtgcgcgacctggtcggcaacgacctgggt
tcggtggagaagatctggagcgccaacagcggcggcggcggcggtggaggcgagaagcgc
tggcgcccggaagtgcagaccgtgctggccggccaggtggtcggcgtgcgccgcaagggt
gagagccagatcttcatccagctggaggacggtcgcggccgcgtggagtgcagcgcgttc
tccgatgcgatggccgagttcggccacctgatgaccaaggaccgcatcctggtggtcaag
ggcggcctgcgcgaggacgaattcaacggcggctacgcactgcgcatccgccagtgctgg
gacttcgacgaagtctgcgccaactacgccacgcggctgtcgttgcgcctggacctgcgc
cagcagcgcccggtctgggagcgcatcaatgccctgctcgaccgccatcgcccggggcgg
acgccgctgcgcctggacctgctgctgaagggcccgcacggcggtgtcgccggcatgctg
gatgtctccgggcaaagcgcagtgcgcatcgattccaagctgatggaggcgctgcgcgcc
gaccccgccgtacgtacgctgaaggtgcgctacagcccgccgtgggccagctga
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