Stenotrophomonas sp. Pemsol: PEM_04980
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Entry
PEM_04980 CDS
T10809
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
steo Stenotrophomonas sp. Pemsol
Pathway
steo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
steo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PEM_04980 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
steo03019
]
PEM_04980 (rnr)
03016 Transfer RNA biogenesis [BR:
steo03016
]
PEM_04980 (rnr)
Enzymes [BR:
steo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PEM_04980 (rnr)
Messenger RNA biogenesis [BR:
steo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PEM_04980 (rnr)
Transfer RNA biogenesis [BR:
steo03016
]
Prokaryotic type
tRNA degradation factors
PEM_04980 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AYA90137
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Position
1093203..1095668
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AA seq
821 aa
AA seq
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MTTKKPSKGGSKSRSQAPKKGPKAGAARTPKPGKPLPGWFPELNEGGTPPRGRKVRTADA
AAPGPAPGRKLPPTGKVIDDPYAAREAEKYEQPIASREAILALLERCEGPQTAEELGARL
GLTAPDRAEALSRRLGAMVRDGQLVQNRRGGFAPIQTLNLVTGVVIANPEGFGFLRPVEG
GDDLFLPPYEMRKVMHGDKVLARVTGIDHRGRREGSIARVLERGMTRLIGRFSIEMGINY
VVPDDKRVQRNVQVPPDQTGGARDGQLVVCELTQAPDSRRPPIGRIIAVLGDKLTASLVV
ETAIHGHELPFEFPQEVLDEAASVPLVVEPAMIGDRVDLRSTPLVTIDGEDAKDFDDAVY
CEPNADGFRLVVAIADVSNYVRPGTPLDEEAQKRATSVYFPGFVVPMLPETLSNGICSLM
PKVDRMCFVCDMQIDRDGLVTHSRFYEAVMNSHARLTYTQVWKAVGEDDADTKAWMGDLL
PQVQRLHQLYKVLSKARAKRGAIEFESSEVRFVLDNRGEVTQAGMLVRNDAHKLIEECMI
AANVEAAKYLLSRHVPAPYRIHEKPPETKYADLLEFLKEFKLSLPPWSKVRPGDYTKLLK
KIRDRPDATLLESVLLRSQSLAIYSPENHGHFGLALEAYAHFTSPIRRYPDLLVHRAIKH
ALSGKPLDKFTYNAREMAALALQCSERERRADEAEREVDERYRAAWMEKHVGGQFDGVIS
GVTSFGLFVELDESKVQGLVHVTQLPQDYYKFDATRKTLTGERRGGSYRLGDRVRILVLK
ASMEERKIDFRLVEHKGEDEGDGLPPLPERGKPAKRTKKQY
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atgactaccaaaaaaccaagcaagggcgggagcaagtcccgcagccaagccccgaagaag
ggcccgaaggcgggcgcagcccgcacccccaagccgggcaagccgctgccaggctggttc
cccgaattgaatgaaggcggtacgccgccgcgcggccgcaaggtccgcaccgctgatgcg
gcagcgcccggcccggccccgggccgcaagctgccgcccaccggcaaggtgatcgacgat
ccctacgccgcccgcgaagccgagaaatacgaacagcccatcgccagccgcgaggccatc
ctggccctgctggagcgttgcgaagggccgcagaccgccgaggaacttggtgcacgcctg
ggcctgaccgcaccggatcgggccgaggcgctgtcgcgccggctcggtgccatggtccgt
gatggccagctggtgcagaaccgccgcggcggtttcgccccgatccagacgttgaacctg
gtcaccggcgtggtgatcgccaacccggaagggttcggtttcctgcgtccggtcgagggc
ggcgacgacctgttcctgccgccgtatgaaatgcgcaaggtgatgcacggcgacaaggtg
ctcgcccgcgtgaccggcatcgatcaccggggccgtcgcgagggcagcattgcgcgcgtg
ctcgaacgcggcatgacccgcctgatcggccgcttcagcatcgagatgggcatcaactac
gtggtgcccgatgacaagcgcgtgcagcgcaacgtgcaggtgccgccggaccagaccggt
ggcgcgcgcgacggccagctggtggtctgcgaactgacccaggccccggacagccgccgc
ccgccgatcggccgcatcatcgccgtgctgggcgacaagctgaccgcgtcgctggtggtg
gagaccgccatccacggtcacgagctgccgttcgagttcccgcaggaggtgctggacgaa
gccgcatcggtgccgctggtggttgagccggcgatgatcggcgaccgtgtcgacctgcgc
agcacgccgctggtcaccatcgacggtgaggatgccaaggacttcgacgacgcggtgtac
tgcgagccgaatgccgatggcttccgcctggtggtggccattgccgatgtctccaactac
gtgcgccccggtacgccgctggacgaggaagcgcagaagcgtgcgacttcggtgtacttc
ccgggcttcgtggtgccgatgctgccggagacgctgtccaacggcatctgctcgctgatg
ccgaaagtcgaccgcatgtgcttcgtctgcgacatgcagatcgaccgcgatggcctggtc
acgcattcgcgcttctacgaggcggtgatgaattcgcacgcgcgcctgacctacacccag
gtgtggaaggcggtcggcgaggacgatgccgataccaaggcctggatgggcgacctgctg
ccgcaggtgcagcgcctgcaccagctgtacaaggtgctgtccaaggcacgcgccaagcgc
ggtgccatcgaattcgaaagcagcgaagtgcgcttcgtgctggacaatcgcggtgaagtc
acccaggctggcatgctggtgcgcaacgacgcgcacaagctgatcgaggaatgcatgatc
gcggccaacgtggaggcggcgaaatacctgctgtcgcgccacgtgccggcgccgtaccgc
atccacgagaagccgccggaaaccaagtacgccgacctgctggaattcctcaaggagttc
aagctgagcctgccgccgtggtcgaaggtgcgcccgggtgactacaccaaactgctgaag
aagatccgcgaccgccctgatgcgacgctgctggagtcggtgctgctgcgcagccagagc
ctggcgatctacagcccggagaaccacggccacttcggcctggcgctggaggcctacgcg
cacttcacctcgccgatccgtcgctatcccgacctgctggtgcaccgcgcgatcaagcat
gcgctgtccggcaagccgctggacaagttcacctacaacgcccgcgagatggccgcgctg
gcgctgcagtgttccgagcgtgagcgccgtgccgacgaggccgagcgcgaggtcgacgag
cgttaccgcgcggcgtggatggaaaagcacgtgggcggccagttcgacggcgtgatcagc
ggcgtgaccagcttcggcctgttcgtggaactggacgagtcgaaggtgcagggcctggtc
cacgtgacccagctgccgcaggactattacaagttcgacgcgacccgcaagacgctgacc
ggcgagcgccgcggcggcagctaccggctgggcgaccgcgtgcgcatcctggtgctgaag
gccagcatggaagagcgcaagatcgacttccggctggtcgaacacaagggcgaggacgag
ggtgacgggctgccgccgctgcctgagcggggcaagccagccaagcgcaccaagaagcaa
tattga
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