Stenotrophomonas sp. Pemsol: PEM_05440
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Entry
PEM_05440 CDS
T10809
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
steo Stenotrophomonas sp. Pemsol
Pathway
steo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
steo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PEM_05440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
steo03400
]
PEM_05440
DNA repair and recombination proteins [BR:
steo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PEM_05440
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PEM_05440
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
UB2H
AIP3
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AYA90224
LinkDB
All DBs
Position
1192667..1194691
Genome browser
AA seq
674 aa
AA seq
DB search
MSDSFELVSPYSPAGDQPNAIAKLTSNFEAGIAKQTLLGVTGSGKTYTIANVIQNVQKPT
LIMAPNKTLAAQLYGEFKAFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIE
QMRLAATKTLLSRPDAIVVATVSAIYGLGAPEDYLSLRLILSKGERIDQRDLINHLTQLQ
YTRNEYELQRGTFRVRGEVIDVFPAESDSEALRLELFDGEVEKITLFDPLTGETLRNMQR
FTVYPKTHYATTRERVLAAIETIKVELKERLEQLYAQNKLVEAQRLAQRTQFDLEMMAEV
GYCNGIENYSRHLTGKNAGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMFKGDRSRKET
LVEFGFRLPSALDNRPLRFEEWEERCPRSIYVSATPGPYELREAGDEITELVVRPTGLID
PVVEIRPVGTQVDDLMSEANARIKAGDRVLVTTLTKRMAENLTEYLTEHGIRVRYLHSDV
DTVERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIG
RAARNVRGKAILYADKITRSMQAAIDETDRRRAKQVEYNEEHGIVPRSVARPIVDVLEGA
RSDAAEKEAKKGKGKGRASVAEEAADYRSLSPAQLATRLKALEQQMYQHAKDLEFEDAAR
VRDQIRQLKEASLG
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacagttttgaacttgtctcgccgtattcgccggcgggcgaccagcccaacgcc
atcgcgaagctgaccagcaacttcgaggccggcatcgccaagcagaccctgctgggcgtg
accggctcgggcaagacttacaccatcgccaacgtcatccagaacgttcagaagccgacg
ctgatcatggcaccgaacaagacgctggcggcgcagctgtatggcgagttcaaggctttc
ttcccgcacaatgcggtggagtacttcgtcagttattacgactactaccagcccgaagcc
tacgtgccgtcgtcggacaccttcatcgagaaggacagttcgatcaacgaacacatcgag
cagatgcggctggccgcgaccaagaccctgctgtcgcgcccggacgcgatcgtggtggcc
acggtgtccgcgatctatggcctgggtgcgccggaagactacctttcactgcgcctgatc
ctgtccaagggcgagcgcatcgaccagcgcgacctgatcaaccacctgacccagctgcag
tacacgcgcaatgagtacgagctgcagcgcggtaccttccgcgtgcgcggcgaagtgatc
gacgtgttcccggccgagtcggacagcgaagcactgcgcctcgaactgttcgatggcgag
gtcgagaagatcaccctgttcgatccgctcaccggcgagacgctgcgcaacatgcagcgc
ttcacggtctacccgaagacccactatgcgaccacgcgcgagcgcgtgctggcggcgatc
gagacgatcaaggtagagctgaaggagcggctcgagcagctctacgcgcagaacaagctg
gtggaggcgcagcgcctggcgcagcgcacgcagttcgacctggaaatgatggccgaggtc
ggttactgcaacggcatcgagaactactcccggcacctgaccggcaagaatgccggcgag
ccgccaccgaccctgttcgactacctgccgccggatgcgctgctggtgatcgatgaatcg
catgtgaccattccgcagatcggcgccatgttcaagggtgaccgctcgcgcaaggaaacc
ctggttgagttcggtttccgcctgccgtcggcgctggacaaccgcccgctgcgcttcgag
gaatgggaggagcgctgcccgcgcagcatctacgtgtcggccacgcccgggccctatgaa
ctgcgtgaagccggtgacgagatcaccgaactggtggtgcgcccaaccggcctgatcgac
ccggtggtggagatccggccggtcggtacccaggtcgacgacctgatgagcgaggccaac
gcgcgcatcaaggcgggcgaccgcgtgctggtcaccacgctgaccaagcgcatggctgaa
aacctcaccgagtacctcaccgaacacggtatccgcgtgcgctacctgcactcggacgtg
gatacggtcgagcgcgtggagatcatccgcgacctgcgcctgggcaagttcgacgtgctg
gtcggcatcaacctgctgcgtgaaggcctggacatgcccgaggtatcgctggtggcgatc
ctcgatgccgacaaggaaggcttcctgcgctccaccggctcgctgatccagaccatcggc
cgcgccgcacgcaatgtgcgcggcaaggcgatcctgtacgccgacaagatcacccgctcg
atgcaggcggcgatcgatgagaccgaccggcgccgtgccaagcaggtcgagtacaacgaa
gaacatggcatcgtgccgcgctcggtggcgcgcccgatcgtcgatgtcctcgaaggcgcg
cgttcggatgccgccgagaaggaagccaagaagggtaagggcaagggccgggcgagtgtg
gccgaagaagcggccgactatcgttcgctgtctccggcgcagctggcgacccgtctcaag
gcgctggaacaacagatgtaccagcacgccaaggacctggaattcgaagatgccgcacgg
gtgcgtgaccagatccggcagctgaaggaagccagcctgggctga
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