Stenotrophomonas sp. Pemsol: PEM_13450
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Entry
PEM_13450 CDS
T10809
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K02667
two-component system, NtrC family, response regulator PilR
Organism
steo Stenotrophomonas sp. Pemsol
Pathway
steo02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
steo00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PEM_13450
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
steo02022
]
PEM_13450
02035 Bacterial motility proteins [BR:
steo02035
]
PEM_13450
Two-component system [BR:
steo02022
]
NtrC family
PilS-PilR (type 4 fimbriae synthesis)
PEM_13450
Bacterial motility proteins [BR:
steo02035
]
Pilus system
Twitching motility proteins
PEM_13450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
Sigma54_activ_2
AAA_lid_14
HTH_8
AAA_5
Mg_chelatase
AAA_19
AAA_16
HTH_50
HTH_30
Motif
Other DBs
NCBI-ProteinID:
AYA91703
LinkDB
All DBs
Position
2909596..2910969
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AA seq
457 aa
AA seq
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MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPD
GNGIELVSEIAQHYPRTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIAVLRGLVKHAL
ELNNTERPVPGPAAEQGARLLGDSPAMDVLRTTIGKVARSQAPVYILGESGVGKELVART
IHAQGARAAGPFVPVNCGAIPGELMESEFFGHRKGSFSGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAANEEPVDVRILSATHKDLAELVEDGRFRHDLYYR
INVIELRVPPLRERRQDLPELAASVLARLARSHGRPTPLLAPSALDALAQYAFPGNVREL
ENILERALALAEEDRIGADDLRLPQHAPRTPGSAAHAEAVADLQPGNAALPSYIEQLERS
AIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaaacccgcagcgccctcgtcgtcgacgacgaacgcgacatccgcgaactgctg
gtactcacgctcggccgcatggggctgcgcatcagtaccgcagccaaccttgccgaagcg
cgcgaactgctggccagcaatccgtacgacctgtgcatcaccgacatgcgcctgccggac
ggcaacggcatcgagctggtcagcgagatcgcccagcactacccgcgcacgccggtggcg
atgatcactgcctttggcagcatggacctggcggtggaagcgctgaaggccggcgccttc
gatttcgtcagcaagccggtggacatcgccgtgttgcgtggcctggtcaagcacgcgctg
gaactcaacaacaccgagcgccccgtgcccggccctgccgccgaacagggcgcacgcctg
cttggcgactcgccggccatggacgtgctgcgtaccaccatcggcaaggtcgcgcgcagc
caggcgccggtctacatcctcggtgaatccggcgtgggcaaggagctggtcgcgcgcacc
atccatgcccagggtgcccgcgcggccggcccgttcgtgccggtcaactgcggcgccatt
cccggcgagctgatggagagcgaattcttcggccaccgcaagggcagcttcagcggcgcc
cacgccgacaagcccgggctgttccaggccgcgcatggcggcaccctgttcctggacgaa
gtggccgagctgcccctgcagatgcaggtgaagctgctgcgcgcgatccaggaaaaatcg
gtgcgcgcggtcggtgcggccaacgaagagccggtggacgtgcgcatcctctcggccacc
cacaaggacctggccgaactggtcgaggacggccgtttccgccacgacctctactaccgc
atcaacgtgatcgaactgagggtgccgccgctgcgcgagcgtcgccaggacctgccggaa
ctggccgcgtcggtgctggcacggctggcccgcagccatggccgcccgacgccgttgctg
gcgccgtcggcactggacgcactggcccagtacgccttccccggcaacgtgcgtgaactg
gagaacatcctggagcgtgcactggcactggccgaagaagaccgcatcggcgccgacgac
ctgcgcctgccgcaacatgccccgcgcacgcccggcagcgcagcacatgccgaagccgtt
gccgacctgcagcccggcaacgccgccctgccctcgtacatcgaacagctcgagcgcagc
gccatccagcgcgcgctggaagaaaaccgctggaacaagacccgcaccgccgcgcagctg
ggcatcaccttccgtgcgctgcgctacaagctgaagaagttgggcatggagtaa
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