Stenotrophomonas sp. Pemsol: PEM_14400
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Entry
PEM_14400 CDS
T10809
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
steo Stenotrophomonas sp. Pemsol
Pathway
steo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
steo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PEM_14400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
steo03019
]
PEM_14400
Enzymes [BR:
steo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PEM_14400
Messenger RNA biogenesis [BR:
steo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PEM_14400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
P-loop_SecA
AAA_22
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AYA91880
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All DBs
Position
3137906..3139324
Genome browser
AA seq
472 aa
AA seq
DB search
MSFESLGLAPFLLRALAEQGYETPTPIQQQAIPLALAGRDLLAGAQTGTGKTAAFGLPLL
QHLGTASQEVRAGPRKPRALILAPTRELATQVHDSLRGYSKYLRIPSACIYGGVGMGNQL
DILRRGVDLLVACPGRLIDHLERRSVDLSGIELLVLDEADRMLDMGFLPSIKRILAKLPK
QNRQTLLFSATFEDNIRQLALEFMRNPEQIQVTPKNTVAETITHRVHPVDAGRKRDLLLH
LLAQDSREQTLVFARTKHGSDKLATFLEKSGIKTAAIHGNKSQGQRLRALGDFKAGRVTV
LVATDIAARGIDINELPKVINFDLPMVAEDYVHRIGRTGRNGATGQAISLVAQDEVKLLR
AIVRLLGRDMDIRDVPGFELQVPIRWGNSAPGKAEHDTGERAPRKSHARRPHGDAPRHAH
AGPKKAGGGRREGGGNGQQRAGAGAGQGQRRGGGGNGGGRGRGQGGGGGRAG
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgaatcgctgggcctggcgcccttcctgctgcgtgcgcttgccgagcagggc
tacgaaaccccgaccccgatccagcagcaggcgatcccgctggcgctggccggtcgcgac
ctgctggccggcgcacagaccggtaccggcaagactgctgcgttcggcctgccgttgctg
cagcacctgggcaccgcctcgcaggaggtgcgtgccggcccgcgcaagccgcgtgcgctg
atcctggccccgacccgcgaactggccacccaggtgcatgacagtctgcgcggctacagc
aagtatctgcgcattcccagcgcctgcatctacggcggtgtcggcatgggcaaccagctg
gacatcctgcgccgtggcgtggacctgctggtggcctgcccgggccgcctgatcgaccat
ctggaacgtcgcagtgtcgacctgtccggcattgaactgctggtgctggacgaagccgac
cgcatgctcgacatgggcttcctgccgtcgatcaagcgcatcctggccaagctgccgaag
cagaaccgccagacgctgctgttctcggccaccttcgaggacaacatccgccagctggcg
ctggagttcatgcgcaacccggaacagatccaggtgacgccgaagaacaccgtggccgaa
accatcacccatcgcgtgcatccggtcgatgccggccgcaagcgcgacctgctgctgcac
ctgctggcgcaggacagccgcgagcagaccctggtgttcgcacgcaccaagcacggcagc
gacaagctggccacgttcctggaaaagtcaggcatcaagaccgcggcgatccatggcaac
aagagccagggccagcgcctgcgtgcgctgggcgacttcaaggccggccgcgtgaccgtg
ctggtggccaccgacatcgctgcgcgcggcatcgacatcaacgagctgccgaaggtgatc
aacttcgacctgccgatggtggccgaggactacgtgcaccgcatcggtcgtaccggccgc
aacggcgcgaccggccaggcgatttcgctggtggcgcaggatgaagtgaagctgctgcgc
gcgatcgtgcgcctgctgggccgcgacatggacatccgcgatgtgccgggcttcgaactg
caggttccgatccgctggggcaacagtgcgccgggcaaggccgagcacgataccggcgag
cgcgcaccgcgcaagagccacgcacgccgtccgcacggtgatgcaccgcgccatgcgcat
gccggcccgaagaaggccggtggtggccgtcgcgagggcggtggcaacggccagcaacgt
gcgggtgcaggcgccggtcagggccagcgtcgtggcggtggcggtaatggtggcggccgt
ggccgcggccagggcggcggcggcggtcgcgccggctga
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