Stenotrophomonas sp. Pemsol: PEM_15465
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Entry
PEM_15465 CDS
T10809
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
steo Stenotrophomonas sp. Pemsol
Brite
KEGG Orthology (KO) [BR:
steo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
steo03032
]
PEM_15465
03400 DNA repair and recombination proteins [BR:
steo03400
]
PEM_15465
Enzymes [BR:
steo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PEM_15465
DNA replication proteins [BR:
steo03032
]
Prokaryotic type
DNA Topoisomerases
PEM_15465
DNA repair and recombination proteins [BR:
steo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PEM_15465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
HC2
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
AYA92081
LinkDB
All DBs
Position
3372202..3374685
Genome browser
AA seq
827 aa
AA seq
DB search
MPKHLLIVESPAKAKTINKYLGKDYTVLASYGHVRDLIPKEGAVDPDNGFAMHYDVIDKN
EKHVDAIAKAAKGADDILLATDPDREGEAISWHIAEILKERGLVKDKPMQRVVFTEITPR
AIKEAISQPRAIASDLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIV
EREEEIEAFIAREYWSIAAECAHPSQHFNAKLVKLDGQKFEQFTVTDGDTAEAARMRIQQ
AAQGSLHVTDVASKERKRRPAPPFTTSTLQQEASRKLGFTTRKTMQVAQKLYEGVAIGDE
GTVGLISYMRTDSVNLSQDALAEIRDVIARDYGIASLPDQPNTYQTKSKNAQEAHEAVRP
TSALRTPSQVARFLTDDERRLYELIWKRAVACQMIPATLNTVSVDLSAGSEHVFRASGTT
VVVPGFLAVYEEGKDNKSAEDEDEGRKLPAMKPGDRIPLERILAEQHFTQPPPRYTEAAL
VKALEEYGIGRPSTYASIIQTLLFRKYVEMEGRSFRPSDVGRAVSKFLSSHFTQYVDYDF
TARLEDELDAVSRGEEEWIPLMARFWEPFKELVEDKKESVDRAEASGARELGTDPKTGKP
VSVRLGRFGPYAAIGSTAEDAEEKPKFASLRPGQSMHTISLEDALELFLMPRALGEDNGE
PVSVGIGRFGPFAKRGSTYASLKKEDDPYTIDLARAVFLIEEKEEIARNRIIKEFEGSDI
QVLNGRFGPYISDGKMNGKIPKDREPSSLTLAEVQQLMEETGKPVRKGFGAKKAAAKKAP
AKKAAVKKEAAPKKAAARKAPAKKAVKKAAAKKAPAKKAVKKTAAKK
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atgcccaagcacctgctcatcgtcgaatcgccggccaaggccaagacgatcaacaaatac
ctcggcaaggactacaccgtcctggcctcgtatgggcatgtgcgtgacctgattccgaag
gaaggcgcggtcgacccggacaacgggttcgccatgcactacgacgtgatcgacaagaac
gaaaagcatgtcgatgcgatcgccaaggccgccaagggcgccgacgacatcctgctggca
accgacccggatcgcgagggtgaagcgatcagctggcatatcgccgagatcctgaaggaa
cgcgggctggtcaaggacaagccgatgcagcgcgtggtgttcaccgagatcaccccgcgc
gccatcaaggaagcgatcagccagccgcgtgcgatcgccagcgacctcgtcgacgcccag
caggcccgccgcgcacttgactacctggtcggcttcaacctgtcgccggtgctgtggcgc
aaggtgcagcgcggcctgtctgccggccgcgtgcagagcccggcgctgcgcatgatcgtc
gagcgcgaggaagagatcgaagccttcatcgcccgcgagtactggtcgatcgctgccgag
tgcgcgcacccgtcccagcacttcaatgccaagctggtcaaactggacgggcagaagttc
gagcagttcaccgtcaccgatggcgacaccgctgaagcggcgcgcatgcgcatccagcag
gccgcgcagggctcgctgcacgtcaccgacgtcgccagcaaggagcgcaagcgccgcccg
gcgccgccgttcaccacctccaccctgcagcaggaagcctcgcgcaagctcggcttcacc
acccgcaagaccatgcaggtggcgcagaagctgtatgaaggcgtggccatcggcgacgaa
ggcaccgtcggcctgatttcgtacatgcgtaccgactcggtgaacctgtcgcaggacgcg
ctggcggaaatccgcgacgtgatcgcccgcgactacggcatcgcctcgctgccggaccag
cccaacacctaccagaccaagtcgaagaacgcccaggaagcgcacgaagcggtgcgcccg
acctcggccctgcgcaccccgtcgcaggtcgcccggttccttaccgacgacgagcggcgc
ctgtacgagctgatctggaagcgtgcggtggcctgccagatgatcccggccacgctcaac
acggtcagcgtcgacctgtcggccggcagcgaacacgtgttccgcgccagcggcaccacc
gtggtcgtgcccggcttcctggccgtgtacgaggaaggcaaggacaacaagagcgccgag
gacgaggatgagggccgcaagctgcccgcgatgaagccgggcgaccgcatcccgctggaa
cgcatcctggccgaacagcatttcacccagccaccgccgcgctacaccgaagcggcgctg
gtgaaggcgctggaagagtacggcatcggccgtccctcgacctacgcctcgatcatccag
accctgctgttccgcaagtatgtggaaatggaaggccgcagcttccgcccgtccgacgtg
ggccgcgcggtgtccaagttcctgtccagccacttcacccagtacgtggattacgacttc
actgccaggcttgaggacgagctcgatgccgtctcgcgcggtgaggaagaatggatcccg
ctgatggcccgtttctgggagccgttcaaggaactggtcgaagacaagaaggaatcggtc
gaccgcgccgaggccagtggcgcgcgcgagctcggcaccgaccccaagaccggcaagccg
gtcagcgtgcggctgggtcgcttcgggccgtatgccgccatcggcagcaccgccgaggac
gccgaggaaaagccgaagttcgcctcattgcgccccggccagtcgatgcacaccatctcg
ttggaagacgcgctggaactgttcctgatgccgcgcgcactgggcgaggacaatggtgag
ccggtcagcgtcggcatcggccgcttcggcccgttcgccaagcgcggcagcacctacgcc
tcgctgaagaaggaagacgacccgtacaccatcgacctggcccgcgccgtattcctgatc
gaagagaaggaagagatcgcgcgcaaccggatcatcaaggagttcgagggcagcgacatc
caggtgctgaacggccgcttcggcccgtacatcagcgatggaaagatgaacggcaagatc
cccaaggatcgcgagccgtcatcgctgaccctggctgaagtgcagcagctgatggaagaa
accggcaagccggtgcgcaagggcttcggcgccaagaaggccgctgcgaagaaggcaccg
gccaagaaggctgcggtgaagaaggaagcagcgccgaagaaggccgcggccaggaaagcg
ccggccaagaaggcggtgaagaaagctgccgcaaagaaggcaccggcgaagaaggccgtc
aagaagaccgctgcaaagaagtag
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