Stenotrophomonas sp. Pemsol: PEM_17630
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Entry
PEM_17630 CDS
T10809
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
steo Stenotrophomonas sp. Pemsol
Brite
KEGG Orthology (KO) [BR:
steo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
steo03016
]
PEM_17630
Enzymes [BR:
steo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
PEM_17630
Transfer RNA biogenesis [BR:
steo03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
PEM_17630
Prokaryotic type
tRNA splicing ligases
PEM_17630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Hexapep
Motif
Other DBs
NCBI-ProteinID:
AYA92473
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Position
3813386..3814606
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AA seq
406 aa
AA seq
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MDTQHNYQWLHAEGSTPIKGWVNGVPLEAQAHEQLRNIAAIPFVGPWVAVMPDVHLGKGA
TVGSVIPTRGAIIPAAVGVDIGCGMAAVRTTLRANDLPDDLRQLRNSIERSIPVGNGRGG
EHQRMPDSIHTRLVQSGLAAGLEKIKDRHRRIRTDKLDRQLGTLGGGNHFIELCLDETDT
VWVMLHSGSRGTGNLIGTYFIEKAREELARRVLGFHLPDKDLAFFMEGEPLFDDYVEAVS
WAQDYARQNREAMMSRVLAEMRHRLPKFQLAAMAVNCHHNYVQKETHHGQELLVTRKGAV
SAREGELGIIPGSMGTRSYIVRGKGNADSFNSCSHGAGRVMSRGAARQQITLAQHREATA
HVECRKDSGVLDESPAAYKSIDDVMAAQLDLVDVVHTLRQVLCVKG
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atggacactcaacacaattatcaatggctgcatgccgagggcagcacgccgatcaagggc
tgggtcaacggcgtgccactggaggcgcaggcgcatgagcagctgcgcaacatcgccgcg
atcccgttcgtcgggccgtgggtggcggtgatgccggacgtgcacctgggcaagggcgcg
accgtcggctcggtgatcccgacccgcggtgcaatcatcccggcggcggtcggcgtcgac
atcggctgcggcatggcggccgtgcgcaccacgctgcgcgccaacgacctgcccgatgac
ctgcggcagctgcgcaacagcatcgagcgcagcatcccggtcggcaacgggcgcggcggc
gagcatcagcgcatgcccgacagcatccatacccggctggtgcagtccgggctggccgcc
ggcctggagaagatcaaggacaggcaccgcaggatccgcaccgacaagctcgaccgccag
ctcggtacgctgggtggcggcaaccacttcatcgaactgtgcctggacgagacggatacg
gtgtgggtgatgctgcacagcgggtcgcgcggtaccggcaacctgatcggtacctacttc
atcgagaaggcgcgcgaggaactggcccggcgcgtgctgggcttccacctgccggacaag
gacctggcgttcttcatggaaggcgagccgctgttcgatgactacgtcgaagccgtgtcg
tgggcacaggactacgcccggcagaaccgcgaggcgatgatgtcgcgcgtgctggccgag
atgcgccaccggctgccgaagttccagctggcggcgatggcagtgaactgccaccacaac
tacgtgcagaaggaaacgcaccacggacaggagctgctggtgacgcgcaagggggccgtc
agtgcccgcgagggtgagctgggcatcattcccggcagcatgggcacgcgcagttacatc
gtgcgtggcaagggcaacgcggacagcttcaacagctgcagccacggtgccggccgggtg
atgagccgtggcgccgcgcgccagcagatcacgctggcccagcatcgcgaggccaccgcg
catgtggaatgccgcaaggacagcggcgtgctggacgagtcaccggccgcgtacaagtcg
atcgacgatgtgatggccgcgcagctggacctggtcgacgtggtgcacacgctgcgccag
gtgttgtgcgtgaaggggtaa
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