Stenotrophomonas sp. Pemsol: PEM_18000
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Entry
PEM_18000 CDS
T10809
Symbol
xth
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
steo Stenotrophomonas sp. Pemsol
Pathway
steo03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
steo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PEM_18000 (xth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
steo03400
]
PEM_18000 (xth)
Enzymes [BR:
steo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
PEM_18000 (xth)
DNA repair and recombination proteins [BR:
steo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
PEM_18000 (xth)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
Motif
Other DBs
NCBI-ProteinID:
AYA92542
LinkDB
All DBs
Position
complement(3889522..3890289)
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AA seq
255 aa
AA seq
DB search
MKIASWNVNSLNVRLPHLEQWLKEFGPDIVGIQETKLEDHKFPDSALIAAGYRSVFAGQK
TYNGVALLSREPAQDVQIGIPGFEDEQKRVIAGTFGDLRVINLYVVNGQDIGTDKYEYKL
RWLEAVHAWIAEELQRHPKLIVMGDFNIAPDARDVHDPQVWNDNHILTSTAERGALNKLL
QLGLHDGFRLHNDEAGTFSWWDYRAAGFRRNLGLRIDLTLVSDALKSGAVASGIDREPRT
WERPSDHAPAWVQIG
NT seq
768 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcgcctcgtggaacgtcaattcgctcaatgtccgcctgccgcacctggaacag
tggctcaaggagttcggcccggacatcgtcggtatccaggaaaccaagctggaggaccac
aagttccccgattcggcgctgatcgctgccggctaccgcagcgtgttcgccggccagaag
acctacaacggcgtggcgctgctgtcgcgtgagcctgcacaggacgtgcagatcggcatt
cccggcttcgaggacgagcagaagcgcgtcatcgccggtaccttcggcgacctgcgggta
atcaacctgtacgtggtcaacggccaggacatcggtaccgacaagtacgagtacaagttg
cgctggcttgaggcggtgcatgcctggatcgccgaagaactgcagcgccacccgaagctg
atcgtgatgggggacttcaacattgccccggacgcacgcgacgtgcacgacccgcaggtg
tggaacgacaaccacatcctgacctccaccgccgagcgcggcgcgctcaacaagctgctg
cagctgggcctgcacgatggcttccgcctgcacaacgacgaggcgggcaccttcagctgg
tgggattaccgcgccgccggcttccgtcgcaacctgggcctgcgcatcgacctgaccctg
gtctccgatgcgctgaagagcggtgcggtggcttcgggcatcgaccgcgagccgcgcacc
tgggaacgtccgagcgaccatgcgccggcgtgggtgcagatcggttga
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