Stenotrophomonas sp. Pemsol: PEM_18255
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Entry
PEM_18255 CDS
T10809
Symbol
recC
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
steo Stenotrophomonas sp. Pemsol
Pathway
steo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
steo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PEM_18255 (recC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
steo03400
]
PEM_18255 (recC)
Enzymes [BR:
steo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PEM_18255 (recC)
DNA repair and recombination proteins [BR:
steo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PEM_18255 (recC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
NNH6
Motif
Other DBs
NCBI-ProteinID:
AYA92590
LinkDB
All DBs
Position
complement(3957738..3961085)
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AA seq
1115 aa
AA seq
DB search
MMSDPGSDFRLYHSNSLDVLAALLARNVRVPVPGQPLLAPEVVLIPQVAMRRWLQATLAA
EYGVAANLEFLTPGEFVARALNANVPGERDDLDAAGLHWKLYQALRDPALLAQPPMRALQ
SYLAGGDALKPWALAGELASVFEKYQAWRRDWLLRWEAGADPADPQAILWRTIAHGRDYR
ARRIQAYLDRFEGAGQPLPQGLPPRMSAFATLNISPDVLRVMATQARVGELHFYMPTPVQ
SYWGDLQTLAERLRSGAPDPFGEAAGENRLLEAWGAAGRDFMAVLGSYEVVHPAGEIAAY
SDPEEDTRPTLDEGGLSDSLLHRLQRDLFHRRALPSGELHDGLRSDDPSLQVHACHTRLR
ELQVLHDQLRSLLQDPRFDPPLQAREIAVLAPDIDPYVPYLEAVFGGRGGEEEHIPYALA
DSSPLAGEPLADVFVHLLGLPVSRFGLNEVLDLLASAPLAEAAGLEAVDFDRLHGWLQQA
GARWGLDAKHRNQHQAPADDAYTWQFALDRLVLGHATGSEADLAGVAPWIELEGGALEAL
DRLLRLLRVLAVYQRRLGELLTPAQWRQRLLSLLDALLPTAPSSPNSQRALERLRKLLNQ
FADDAAKAGFEDGVPPEVVRSHFAGVLGEADTRAPLLTGGISFGRMVPMRLLPFRVICVL
GLNDGDFPRRDPAAGLNQLTAELDTPRRRPGDRSTREDDRFLFLQLFAAAQEVFYLSYLG
ADPRDGSVREPSVLVSELIDAAAAYHLDPPAAVRDFTVRHALQPFSPAAFGEGDPRRFSY
RRQWHPAAGRLTGQRGGLQPWFDAPLPPPPDDAVEDELALDTLRRFLCDPAGQFLAQSLG
LRLADDAGEVDDLEPLVLSSRGPEKRSVQAAVVRATLSGDTEPLYPRLRARGLLPSGPLG
QRQFEVEQLKTRPYASALLGWMQGEPLESRRYEVDIDGVRLHGRVADRHPEGLVRLRAGT
LNGNAVIRQGLDWLLANAAGDALPLVQFHDGGDAGPGPHVLPALSAPAARAALRALLQLR
QRGLREPLRFAPYTGWALYNAPAEKQRSEGWKQWHGSDRSWGESSSDAWQLLLRGADPFA
SDASYADLLRNSQVVFSAVREGRTLGAETRQEGSA
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atgatgagtgacccgggcagcgatttccgcctctaccattccaactccctggacgtgctg
gctgcgctgctggcacgcaacgtgcgtgtgccggttccgggccagccgttgctcgcgccg
gaggtggtgctgatcccgcaggtggcgatgcggcgttggctgcaagcgacactcgctgcc
gagtatggcgtggccgccaacctcgagttcctgaccccgggcgagttcgttgcccgtgca
ctcaatgccaatgtgccgggcgaacgcgacgacctggacgccgcgggcctgcactggaag
ctgtaccaggcactgcgcgacccggcgctgctggcgcagccaccgatgcgcgcgctgcag
tcctatcttgccggcggcgacgccctgaagccgtgggcactggccggtgaactggcgtcg
gtgttcgagaagtaccaggcctggcgccgcgactggttgctgcgctgggaggccggcgcc
gacccggccgacccgcaggcgatcctctggcgcaccatcgcccatggccgcgactaccgc
gcgcgccgcatccaggcgtacctggatcgcttcgagggtgccggccagccgctgccgcag
ggcctgccaccgcggatgtccgcgttcgcgacgctcaacatctcgcccgacgtgctgcgg
gtgatggccacccaggcgcgggtgggcgagctgcacttctatatgcccactccggtgcag
tcgtactggggtgacctgcagacgctggccgagcgcctgcgcagcggcgcgcccgatccc
ttcggtgaagcggccggtgagaaccgcctgctggaggcctggggtgcggccggccgcgac
ttcatggcggtgctgggcagctacgaggtggtgcacccggccggcgagattgccgcgtat
tcggatccggaagaagacacccggccgacccttgacgaaggcggcctgtccgacagcctg
ctgcatcgcctgcagcgcgatcttttccatcgccgcgcgttgccctcgggcgagctgcac
gatgggctgcgcagcgacgaccccagcctgcaggtgcatgcctgccacacccggctgcgc
gagcttcaggtgctgcacgaccagctgcgcagcctgctgcaggaccctcgcttcgacccg
ccgctgcaggcgcgcgagatcgcggtgctggcgccggacatcgatccctatgtgccgtac
ctggaggcagtgttcggcggccgcggcggcgaggaggagcacattccctacgcgctggcc
gacagcagcccactggcaggagagccgctggccgatgtgttcgtgcacctgctgggcctg
ccggtctcgcgtttcggcctgaacgaagtgctggacctgctggccagcgcgccgctggcc
gaagcggccggactggaggcggtggacttcgatcgcctgcacggctggctgcagcaggcc
ggcgcacgctggggcctggatgcgaagcaccgcaaccagcaccaggcgccggccgacgac
gcctacacctggcagttcgcactggaccgcctggtgctcggtcacgccaccggcagcgag
gcggacctggccggcgtggcgccgtggatcgaactggaaggcggcgcgctggaagcactg
gaccggctgctgcggctgctgcgcgtgctggcggtctaccagcgtcgcctcggcgagctg
ctgaccccggcgcagtggcggcaacggctgctgtcgctgctggacgcgctgctgccgacc
gcgcccagctcgcccaacagccagcgtgccctcgagcgcctgcgcaagctgctgaatcag
ttcgccgacgatgccgccaaggccggtttcgaagatggcgtgccgcctgaggtggtgcgt
tcgcacttcgccggcgtactgggcgaggccgatacgcgcgcgccgctgctgaccggtggc
atcagtttcggccgcatggtgccgatgcgcctgctgccgttccgggtgatctgcgtgctc
ggtctcaatgacggcgatttcccgcgccgtgacccggccgcgggcctcaaccagctcacc
gccgagctggacacgccacgccgccgcccgggcgatcgctccacccgcgaagacgaccgc
ttcctgttcctgcagctgttcgccgccgcgcaggaggtgttctacctcagctacctcggc
gccgatccacgcgatggcagcgtgcgtgagccgtcggtgctggtcagtgaactgatcgat
gccgccgccgcgtatcacctcgatccgcctgcggcggtccgcgactttaccgtgcgccat
gcactgcagccgttctcaccggcggcgttcggagagggtgatccacgccgcttcagctat
cggcggcaatggcatcccgctgccggccgcctcaccggccagcgtggtggcctgcagccg
tggttcgatgccccgctgccgccgccgcccgacgatgccgtggaagacgagctcgcgctc
gacaccctgcgccgcttcctgtgcgacccggccgggcagttcctcgcacagtcgctgggt
ctgcgcctggccgacgatgccggggaagttgatgacctggaaccgctggtgctgtcatcg
cgcggcccggaaaagcgcagcgtgcaggcggcggtggtgcgcgccacgctcagcggtgat
accgagccgttgtacccgcggctgcgcgcgcgtggcctgttgccgtccggtccattgggc
cagcgccagttcgaggtggagcagctgaagacgcgtccgtatgccagtgcgctgctgggc
tggatgcagggcgagccattggaaagccgtcgctacgaagtggacatcgatggcgtgcgc
ctgcacggccgcgtggccgatcggcatcccgaaggcctggtgcggctgcgcgccggcacg
ctcaatggcaatgcagtgatccgccagggcctggactggctgctggccaacgccgccggc
gacgcactgccccttgtgcagttccacgatggcggcgacgccggtcctggcccgcatgta
ctgccggcactgagcgcgcctgctgcacgcgcggcgctgcgcgcgctgctgcagttgcgc
cagcgcggcctgcgtgagccgctgcgctttgccccgtatacgggctgggcgctgtacaac
gcgccggcagagaaacagcgcagcgagggctggaagcagtggcacggcagcgaccgcagc
tggggtgaatccagcagcgacgcctggcagctgctgctgcggggggccgacccgttcgcc
tccgatgccagttatgccgacctgctgcgcaacagccaggtggtcttcagcgcggtgcgc
gaaggccgcaccctcggcgccgaaacgcgccaggagggcagcgcatga
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