Stenotrophomonas sp. Pemsol: PEM_18715
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Entry
PEM_18715 CDS
T10809
Name
(GenBank) DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
steo Stenotrophomonas sp. Pemsol
Brite
KEGG Orthology (KO) [BR:
steo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
steo03032
]
PEM_18715
03400 DNA repair and recombination proteins [BR:
steo03400
]
PEM_18715
Enzymes [BR:
steo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PEM_18715
DNA replication proteins [BR:
steo03032
]
Prokaryotic type
DNA Topoisomerases
PEM_18715
DNA repair and recombination proteins [BR:
steo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PEM_18715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
AYA92675
LinkDB
All DBs
Position
4063024..4064082
Genome browser
AA seq
352 aa
AA seq
DB search
MPTSSTPERQAARAAGLRYVDDTQPGISRRRAGKGFSYRDADGHAVRDAATLQRIRALAI
PPAYTAVWICAHANGHLQATGRDARGRKQYRYHADWAKERDAGKFDRIIAFGEALPTLRR
RLSRDLKQPGFPRDKVLAVVVALLADTLVRVGNESYAQENKSYGLTTLRNRHLDLLRGGR
VRMRFRGKSGQLHEVVVGDRRLGTLVRGIQQLPGQALFQYRDDEGALQPVDSGAVNDYLR
EVMGEDFTAKDFRTWGGTLAAVQALAATELPEPASQRALAKAQREVVCQVAARLGNTPAV
CRKAYIDPCVFAGWERGELASLAGLRGPRQWEQATLKVLRRARRLSRSRQPQ
NT seq
1059 nt
NT seq
+upstream
nt +downstream
nt
atgccaacctcctctacccccgaacgacaggccgcgcgcgcggccggcctgcgctatgtc
gatgacacccagccaggcatcagccggcgtcgcgccggcaagggcttcagttaccgcgat
gccgatggccacgcggttcgcgatgccgccaccctgcagcgcatccgtgcgctggcgatt
ccacctgcgtataccgccgtgtggatctgcgcccacgccaatggccacctgcaggccacc
ggccgcgatgcgcgtggacgcaagcagtatcgctaccatgccgattgggcgaaggagcgc
gatgccggaaagttcgaccgcatcatcgcctttggcgaggcgttgcccacgctgcggcgg
cggctgtcgcgcgatctgaagcagcccggcttcccgcgcgacaaggtgcttgcggtggtg
gtggccctgctggccgacaccctggtgcgggtgggcaacgaaagctatgcacaggaaaac
aaatcctacgggctgacaacgctgcgcaaccgccacctggacctgctgcgcggtggccgc
gtgcgcatgcgcttccggggcaaatccgggcagttgcacgaggtggtggtgggcgatcgg
cggctgggcacgctggtgcgcggcatccagcagctgcccggacaggcgctgttccagtac
cgcgacgacgaaggcgcgctgcagccggtggattccggcgcggtgaacgactacctgcgc
gaggtgatgggcgaagacttcaccgccaaggacttccgcacctggggcggcacgctggcg
gcggtacaggcattggccgccaccgaactgccggaaccggccagccagcgcgcgctggcc
aaggcgcagcgtgaagtggtctgccaagtggcggcacggctgggcaacacgccggccgtg
tgccgcaaggcctacatcgacccgtgcgtgtttgccggctgggagcgcggtgagctggcc
tcgctggccggcctgcgcggcccgcggcagtgggagcaggccacgctgaaagtgctgcgc
cgggcgcggcggctcagtcgcagtcgtcagccgcagtag
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