KEGG   Sulfuracidifex tepidarius: IC006_1547
Entry
IC006_1547        CDS       T06394                                 
Name
(GenBank) Exosome complex component Csl4
  KO
K07573  exosome complex component CSL4
Organism
step  Sulfuracidifex tepidarius
Pathway
step03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:step00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    IC006_1547
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:step03019]
    IC006_1547
Messenger RNA biogenesis [BR:step03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     IC006_1547
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     IC006_1547
SSDB
Motif
Pfam: ECR1_N DUF7130 TerY_C Zn_ribbon_PaaD RUBY_RBDX FtrD-like S1 HD_assoc_2
Other DBs
NCBI-ProteinID: BBG24238
UniProt: A0A510DW90
LinkDB
Position
complement(1388474..1389061)
AA seq 195 aa
MRKQGELALPGEELAVIEEFMPGDGTYEDEGKIRSAITGKIFYDMLNRKSNVIVVKKSPL
INLRKAKYMIGVVDSITGENARVSVYAVEEKNVGDSISAILHVSQIANKRISSISSYLKP
GDIIRAKPITSRIPISLTTKPNDCGVILAKCSICGTLMTREDEEHLRCPYCNNIETRKIG
LYAVKKNGRKTSQKE
NT seq 588 nt   +upstreamnt  +downstreamnt
atgagaaaacaaggagagctcgccttgcccggggaagagttggctgtaatagaggagttt
atgccaggtgatggaacatacgaggacgaaggtaaaataaggtcagcaataacgggcaag
atattttacgatatgttaaatagaaagagcaacgtaatagttgtgaagaaatcccctttg
ataaacctgaggaaagcaaagtacatgataggggttgtggactcaataactggcgagaac
gctagggtatcagtttacgctgtggaggagaagaacgtaggcgattcgatatctgctatc
ctccatgtgtcacagatagccaacaagaggataagctcaatttcctcttacttgaaacca
ggagacataataagggctaagccgataacttcaaggataccaatctccctcactacgaaa
ccgaacgattgcggtgtgattttagcgaagtgctctatctgcggaactttgatgacaagg
gaggacgaagaacatttaaggtgtccttattgcaataacatagaaactagaaaaatagga
ctatatgcggtgaagaagaatggacgtaagacttctcaaaaagaatga

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