Sulfuracidifex tepidarius: IC006_1547
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Entry
IC006_1547 CDS
T06394
Name
(GenBank) Exosome complex component Csl4
KO
K07573
exosome complex component CSL4
Organism
step
Sulfuracidifex tepidarius
Pathway
step03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
step00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IC006_1547
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
step03019
]
IC006_1547
Messenger RNA biogenesis [BR:
step03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
IC006_1547
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
IC006_1547
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
ECR1_N
DUF7130
TerY_C
Zn_ribbon_PaaD
RUBY_RBDX
FtrD-like
S1
HD_assoc_2
Motif
Other DBs
NCBI-ProteinID:
BBG24238
UniProt:
A0A510DW90
LinkDB
All DBs
Position
complement(1388474..1389061)
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AA seq
195 aa
AA seq
DB search
MRKQGELALPGEELAVIEEFMPGDGTYEDEGKIRSAITGKIFYDMLNRKSNVIVVKKSPL
INLRKAKYMIGVVDSITGENARVSVYAVEEKNVGDSISAILHVSQIANKRISSISSYLKP
GDIIRAKPITSRIPISLTTKPNDCGVILAKCSICGTLMTREDEEHLRCPYCNNIETRKIG
LYAVKKNGRKTSQKE
NT seq
588 nt
NT seq
+upstream
nt +downstream
nt
atgagaaaacaaggagagctcgccttgcccggggaagagttggctgtaatagaggagttt
atgccaggtgatggaacatacgaggacgaaggtaaaataaggtcagcaataacgggcaag
atattttacgatatgttaaatagaaagagcaacgtaatagttgtgaagaaatcccctttg
ataaacctgaggaaagcaaagtacatgataggggttgtggactcaataactggcgagaac
gctagggtatcagtttacgctgtggaggagaagaacgtaggcgattcgatatctgctatc
ctccatgtgtcacagatagccaacaagaggataagctcaatttcctcttacttgaaacca
ggagacataataagggctaagccgataacttcaaggataccaatctccctcactacgaaa
ccgaacgattgcggtgtgattttagcgaagtgctctatctgcggaactttgatgacaagg
gaggacgaagaacatttaaggtgtccttattgcaataacatagaaactagaaaaatagga
ctatatgcggtgaagaagaatggacgtaagacttctcaaaaagaatga
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