Sulfuracidifex tepidarius: IC006_1727
Help
Entry
IC006_1727 CDS
T06394
Name
(GenBank) Exosome complex component Rrp42
KO
K12589
exosome complex component RRP42
Organism
step
Sulfuracidifex tepidarius
Pathway
step03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
step00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IC006_1727
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
step03019
]
IC006_1727
Messenger RNA biogenesis [BR:
step03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
IC006_1727
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
IC006_1727
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
BBG24415
UniProt:
A0A510E3S6
LinkDB
All DBs
Position
complement(1548150..1549001)
Genome browser
AA seq
283 aa
AA seq
DB search
MSITPSNQNIIPAIKRESILNILEHGSRTDGRKLGDYRNIQASLGYAKKADGSCLLKLGE
TMVLAGVKLETEEPFQDTPNQGNLVVNVELLPLAYETFEPGPPDENAIELARVVDRSLRD
SKAVDLTRLVLVPGKQIWTAWVDIYILNYSGNVLDASTLASICALYDTKLPSIIQGDNGI
SINKEEKNEKFPLNYPVVSVTVAKIGKFLVVDPNLEEESIADAKISISYTPDFRIVGMQK
SGNGTFSVDEINNAENMARSTAEKLFGELKNLLGIDFGEMKHG
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
atgtcaataactccttcaaatcagaacataatacctgcaataaagagagaatcaatctta
aacatattggagcatggaagcagaactgacggaaggaaactaggagattataggaacatc
caagcttcattaggatatgctaagaaggctgatgggtcatgcctccttaaattgggggaa
acgatggttctagcaggagtcaagctagaaacagaagaaccgttccaagatacacccaat
caaggtaatctggtagttaatgtagaacttcttccattagcatatgaaaccttcgaacca
ggtcctccagatgaaaatgcaatagagttagctagagttgttgatagaagtttgagagac
tccaaggctgtggatctaacgaggttggttttagtccctggtaaacagatatggacagcc
tgggtcgatatatacatccttaattatagcggtaatgtcttagatgctagtactttagct
tctatctgtgcactttatgatacgaaactaccttcaataatacaaggcgataacgggata
tcgataaataaggaagagaaaaacgagaagtttccgctcaattatccagtagtttcagtg
acagttgccaaaataggcaagttccttgttgtagatcctaacttggaggaggaaagcata
gctgatgcaaagatatctatctcttatactcctgatttcaggatagtcggaatgcagaaa
agcggaaatggaaccttttcggttgatgaaattaataatgcagaaaatatggctagatca
acggccgaaaagctattcggagaacttaaaaacctattaggaatagactttggtgagatg
aaacatgggtaa
DBGET
integrated database retrieval system
