Stenotrophomonas sp. 169: ICJ04_02400
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Entry
ICJ04_02400 CDS
T08645
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
steq
Stenotrophomonas sp. 169
Pathway
steq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
steq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ICJ04_02400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
steq03019
]
ICJ04_02400
Enzymes [BR:
steq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ICJ04_02400
Messenger RNA biogenesis [BR:
steq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ICJ04_02400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
HEM4
AAA_22
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
QNR97790
UniProt:
A0A7H1AN18
LinkDB
All DBs
Position
complement(567467..568894)
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AA seq
475 aa
AA seq
DB search
MSFESLGLAPFLLRALSEQGYETPTPIQEQAIPLALAGRDLLAGAQTGTGKTAAFGLPLL
QHLATSSQEVSNGGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSACIYGGVGMGNQ
LDILRRGVDLLVACPGRLIDHIERRSIDLSGIEVLVLDEADRMLDMGFLPSIKRILAKLP
KQNRQTLLFSATFEESIKQLAMEFMRNPEQIQVTPKNTVAELITHRVHPVDGSRKRDLLL
HLLAQDSREQTLVFARTKHGSDKLAAFLDKSGIKTAAIHGNKSQGQRLRALADFKAGRVT
VLVATDIAARGIDINELPKVINFDLPMVAEDYVHRIGRTGRNGATGEAISLVAQDEVKLL
RQIVRLLGRDMDIRDVPGFELQVPIRWGNSAPGKADSDMGDRAVRKTSHARRPHGDAPRH
AHAGPKKPGGGRREGGGNGAGQARAAQGQGQRRGGGGAAGAGAGRGRSAGTSRAV
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgaatccctgggccttgcgcccttcctgctgcgtgcgctttccgagcagggc
tatgaaaccccgaccccgatccaggagcaggcgatcccgctcgccctggccggccgtgac
ctgctggccggcgcacagaccggcaccggcaagaccgccgccttcggcctgccgctgctg
cagcacctggccaccagttcgcaggaagtgtccaacggcggcccgcgcaagccgcgcgcg
ctgatcctgaccccgacccgcgaactcgccacccaggtgcacgacagcctgcgcggctac
agcaagtacctgcgcattccgagcgcctgcatctacggcggcgtcggcatgggcaaccag
ctggacatcctgcgccgtggcgtggacctgctggtggcctgcccgggccgcctgatcgac
catatcgagcgtcgcagcatcgacctgtccggcattgaagtgctggtgctggacgaagcc
gaccgcatgctcgacatgggcttcctgccgtcgatcaagcgcatcctggccaagctgccc
aagcagaaccgccagaccctgctgttctcggcgaccttcgaagagagcatcaagcagctg
gccatggagttcatgcgcaacccggagcagatccaggtcacgccgaagaacaccgtcgcc
gagctgatcacccaccgcgtccacccggtcgacggcagtcgcaagcgcgacctgctgctg
cacctgctggcgcaggacagccgcgagcagaccctggtcttcgcccgcaccaagcacggc
agcgacaagctggccgcgttcctggacaagtccggcatcaagaccgccgcgatccacggc
aacaagagccagggccagcgcctgcgcgcactggcggacttcaaggccggccgtgtcacc
gtgctggtcgcgaccgacatcgcggcacgcggtatcgacatcaacgagctgccgaaggtg
atcaacttcgatctgccgatggtggccgaagactacgtgcaccgcatcggccgtaccggc
cgtaatggcgccaccggtgaagcgatttcgctggtcgcccaggatgaggtgaagctgctg
cgccagatcgtgcgcctgctgggccgcgacatggatatccgcgacgtaccgggcttcgag
ctgcaggtgccgatccgctggggcaacagtgcaccgggcaaggctgacagcgatatgggt
gaccgtgccgtgcgcaagacctcgcatgcccgtcgtccgcacggcgatgcgccgcgtcac
gcgcatgccggtccgaagaagccgggtggcggtcgtcgcgaaggcggcggcaacggtgcg
ggccaggcgcgtgccgcgcagggccagggccagcgtcgtggtggcggtggtgccgccggc
gccggtgccggtcgtggccgcagcgcgggcaccagccgcgcggtctga
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