Stenotrophomonas sp. 169: ICJ04_05730
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Entry
ICJ04_05730 CDS
T08645
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
steq
Stenotrophomonas sp. 169
Pathway
steq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
steq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ICJ04_05730 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
steq03400
]
ICJ04_05730 (mfd)
Enzymes [BR:
steq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ICJ04_05730 (mfd)
DNA repair and recombination proteins [BR:
steq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ICJ04_05730 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
AAA_30
AAA_16
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QNR98401
UniProt:
A0A7H1APS9
LinkDB
All DBs
Position
complement(1342125..1345589)
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AA seq
1154 aa
AA seq
DB search
MSRSPYPIPPLPRPGQLRAWWRAPSSATALAWYLARAAQAHDGPLLVVAPDNHGANQIEA
DLHTLLGADDSLPVVAFPDWETLPYDRFSPHPDIISQRLSALHRLPGLKRGLVVVPVQTL
MQHLAPKQYVIGGSFDLQVGQRLDLDAEKRRLESAGYRNVPQVMDPGDFAVRGGLLDVYP
MGAREPLRVELLDEDIDTIRAFDPETQRSLDKVQAVHMLPGREVPMDDASISRVMDALRE
RFDVDTRRSSLYQDLKSRLAPAGIEYYLPLFFDRTATLFDYFSADVLPVMAPGVGEAAAA
FWAQTSQRYEQRRHDVERPLLPPDQLYLSPDLLREKLNDLPRVEVWPPEHARIEQAQPLG
DTKLPPLPVAARDATAGQALASFVKEYPGRILIAADTAGRREALLEVLQAASLKPPVVVD
LPSFLAGSERFAITVAPLEDGFALDDPRIAVLTERQLFPERAGQQRRSRRAGREPEAIIR
DLGELTEGAPIVHEDHGVGRYRGLIAMDVGGMPGEFLEIEYAKGDRLYVPVAQLHLISRY
SGASADTAPLHSLGGEQWTKAKRKAAEKVRDVAAELLEIQARRRARAGLALDVDRSMYEP
FAAGFPFEETPDQLAAIDATLRDLASSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQV
AVLVPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVAEGTIDVIIGTHR
LLQPDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIPRTLNMAMAGLRD
LSIIATPPPNRLAVQTFITQWDDALLREAFQRELARGGQLYFLHNDVESIGRMQRELSEL
VPEARIGIAHGQMPERELERVMLEFQKQRFNVLLSTTIIESGIDIPNANTIIINRADRFG
LAQLHQLRGRVGRSHHRAYAYLVVPDRRSITPDAEKRLDAIASMDELGAGFTLATHDLEI
RGAGELLGEDQSGQMAEVGFSLYTELLERAVRSIRLGKLPDLDAGQEVRGAEVELHVPSL
IPNDYLPDVHTRLTLYKRISSARDSASLRELQVEMIDRFGLLPDPAKHMFAIAELKLQAN
ELGIRKLDLGESGGRIVFEAKPNIDPMSVIQLIQKQSNLYSMDGPDKLRIKHPLPLPEDR
FNAARALLTTLAPG
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgctctccttatcccattccgccgctgccccgtcccggccagctccgcgcctgg
tggcgcgctcccagctccgccacggcgctcgcgtggtacctcgcccgtgcggcgcaggca
cacgacggcccgctgctggtcgtcgctccggacaaccacggtgccaaccagatcgaagcc
gatctgcacaccctgctcggtgccgacgacagcttgcctgtggtggcgttcccggattgg
gagacgctgccctacgatcgtttcagcccgcatccggacatcatttcccagcgcctttcc
gcactgcatcgcctgcccggcctgaagcgcggcctggtggtggtacccgtgcagacgctg
atgcagcatctggcaccgaagcagtacgtgatcggcggcagcttcgatctgcaggttggc
cagcgactggaccttgatgcggaaaaacgccgtctggaaagtgctggctaccgcaatgtg
ccgcaggtgatggacccgggcgatttcgccgtgcgcggtggcctgctggatgtctatccg
atgggagcccgcgagccgctgcgggtggaactgctggatgaagacatcgacaccatccgt
gccttcgacccggagacgcagcgctcgctggacaaggtccaggccgtgcacatgctgccc
gggcgcgaagtgccgatggacgacgccagcatctcgcgggtgatggacgcgctgcgcgag
cgcttcgacgtggatacccgtcgcagctcgctgtaccaggatctcaagtcccgcctggca
ccggcgggcatcgagtattacctgccgctgttcttcgaccgcaccgccacgctgttcgat
tacttttccgccgacgtgctgccggtcatggcaccgggcgtgggcgaggcggccgctgcg
ttctgggcacagaccagccagcgctacgaacagcgccggcatgacgtcgaacgcccgctg
ctgccgccggaccagctgtatctgtcgccggatctgctgcgcgagaagctcaacgacctg
ccacgggtggaagtgtggccgcccgaacacgcacgcatcgagcaggcccagcccctgggc
gataccaagctgccgccactgccggtggccgcacgtgatgcaacggcgggccaggcactg
gcctcgttcgtcaaggaatacccgggccgcatcctgatcgccgccgatacggcaggccga
cgggaagcgctgctggaagtactgcaggccgcttcattgaagccgcccgtcgtggtcgac
ctgccctcgttccttgccggcagcgagcgcttcgcgatcaccgttgcaccgttggaagac
ggcttcgcgctggacgatccgcgcatcgcggtgctgaccgaacgccagctgttcccggag
cgcgcaggccagcagcgccgctcgcgccgcgccggtcgcgagcccgaagcgatcatccgc
gaccttggcgagctgaccgaaggtgcaccgatcgtccacgaagaccacggcgtaggtcgc
taccgcggcttgatcgcaatggacgtgggcggaatgcccggcgagttcctcgagatcgag
tacgcgaagggggatcggctgtatgtgccggttgcccaactgcacctgatcagtcgctac
tccggcgcatcggccgataccgcgccgttgcattcgctgggtggcgaacagtggaccaaa
gccaagcgcaaggccgcggagaaggtgcgcgatgtcgccgccgaactgctggaaatccag
gcacgtcgtcgggcgcgtgcaggcctggcgctggacgtggaccgttccatgtacgaaccc
ttcgcggccggctttccgttcgaagagactcccgaccagctggccgccatcgacgccacc
ctgcgcgatctcgccagcagccaaccgatggaccgcgtggtctgcggtgacgtgggcttc
ggcaagaccgaagtggccgtgcgtgctgccttcgctgcggccagcgccggcaagcaggtc
gcggtgctggtgccgaccacgctgctggcagaacagcattaccgcaacttccgcgaccgc
ttcgccgactatccgatgaaggtggaagtgctgtcgcgcttcaaatccaccaaagagatc
aaggcggaactggaaaaggtcgccgagggcaccatcgacgtgatcattggcacgcaccgg
ctgctgcagccggatgtgaagttcaaggatcttggcctcgtggtggtcgatgaagaacag
cgtttcggtgtgcggcagaaggaagcgttgaaagcgatgcgcgccaacgtgcatctactg
accctgacggccacgccgatcccgcgcacgctcaacatggccatggccggcctgcgcgac
ctgtcgatcattgccacgccgccgccgaaccggctggcggtgcagaccttcatcacccaa
tgggacgacgcgctgctgcgcgaagccttccagcgcgagctggcgcgcggcgggcagctt
tatttcctgcacaacgacgtggagagcatcggccgcatgcagcgcgagctgtccgagctg
gtgccggaggcgcgcatcggcattgcccacgggcagatgccggagcgcgagctggaacgg
gtgatgctggaattccagaagcagcgcttcaatgtgctgctgtcgaccacgatcatcgaa
tcgggcatcgacatccccaacgcgaacaccatcatcatcaaccgggcggaccgcttcggg
ctggcgcagctgcaccagctgcgtggccgcgtcggtcgttcgcaccaccgcgcgtacgcc
tatctcgtcgtgccggaccgccggtcgatcacacccgacgcggaaaagcggctcgatgcg
atcgcctcgatggatgagctgggcgccggcttcaccctggcgacccacgatctggagatc
cgtggtgccggcgagctgctgggcgaagaccagagcggccagatggctgaagtgggcttc
agcctgtacaccgagctgctggaacgcgccgtgcgcagcatccggctgggcaaactgccc
gatctggatgcggggcaggaagtccgcggcgccgaggtggaactgcatgtgccgtcgctg
attccgaatgactacctgcccgacgtgcatacgcgcctgaccctgtacaagcgcatttcc
agcgcgcgtgacagtgcatcgctgcgcgaactgcaggtggagatgatcgaccgcttcggc
ctgttgcccgatccggccaagcatatgttcgccattgccgagctgaaactgcaggccaac
gaactgggcatccgcaagctcgatctgggcgaatccggcggtcgcatcgtcttcgaagcc
aaaccgaacatcgatccgatgtccgtgatccagctgatccagaagcagtccaatctgtac
agcatggacggtccggacaagctgcggatcaagcatccgttgccattgccggaagaccgc
ttcaacgcagcgcgcgcactgctgaccacgctggccccgggctga
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