Stenotrophomonas sp. 169: ICJ04_05840
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Entry
ICJ04_05840 CDS
T08645
Symbol
rnc
Name
(GenBank) ribonuclease III
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
steq
Stenotrophomonas sp. 169
Pathway
steq03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
steq00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
ICJ04_05840 (rnc)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
steq03019
]
ICJ04_05840 (rnc)
03009 Ribosome biogenesis [BR:
steq03009
]
ICJ04_05840 (rnc)
03036 Chromosome and associated proteins [BR:
steq03036
]
ICJ04_05840 (rnc)
Enzymes [BR:
steq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
ICJ04_05840 (rnc)
Messenger RNA biogenesis [BR:
steq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ICJ04_05840 (rnc)
Ribosome biogenesis [BR:
steq03009
]
Eukaryotic type
90S particles
RNase
ICJ04_05840 (rnc)
Prokaryotic type
rRNA processing factors
ICJ04_05840 (rnc)
Chromosome and associated proteins [BR:
steq03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
ICJ04_05840 (rnc)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonucleas_3_3
Ribonuclease_3
dsrm
DSRM_2
RM44_endonuclase
DND1_DSRM
Motif
Other DBs
NCBI-ProteinID:
QNR98418
LinkDB
All DBs
Position
1371893..1372576
Genome browser
AA seq
227 aa
AA seq
DB search
MSNKTFQRGDLIGHPFATPDLLVQALRHRSAGVPHNERLEFLGDSIVNMLVAQALYERWP
KADEGALTRGRAELVREGALAERARELMLGDRLTLGAGEMKTGGHRRDSILADAFEAVVA
AIYLDAGFDACRARVLPWFDAAMDALPATGKPGKDPKTRLQEWLQGRQKALPQYELVSES
GDDHAKTFQVRCILTEPTVSTEGEGSSRRLAEQQAAAAALDLLVDSK
NT seq
684 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgaataaaactttccaacgtggtgatctgatcggtcaccctttcgccacgccggac
ctgctcgtgcaggccctgcggcaccgctctgcgggtgtgccacacaacgaacggctggag
ttcctcggcgacagcatcgtcaacatgctggtggcccaggccttatacgaacgctggccg
aaggccgacgaaggggcgctgacacgcggccgtgccgagctggtgcgcgaaggtgcgctc
gccgaacgcgcgcgcgaactgatgctgggcgaccggctgacgctgggcgccggtgaaatg
aagaccggtggtcatcgccgtgattcgatccttgccgatgcgtttgaagccgtggtggcc
gcgatttacctggatgccggcttcgatgcctgccgtgcccgtgtgctgccctggttcgac
gccgccatggatgcgctgccggcgaccggaaagcccggcaaagatcccaagacccgcctg
caggaatggctgcagggccgacagaaggcgttgccgcagtacgaactggtgtcagaatcc
ggtgacgaccacgccaagaccttccaggtacgctgcatcttgaccgaaccaaccgtcagc
accgagggcgaaggctcctcgcggcgattggcagaacaacaggcggccgcggccgcgtta
gacctattggtggattcaaagtga
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