Stenotrophomonas sp. 169: ICJ04_07270
Help
Entry
ICJ04_07270 CDS
T08645
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
steq
Stenotrophomonas sp. 169
Pathway
steq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
steq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ICJ04_07270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
steq03019
]
ICJ04_07270
03009 Ribosome biogenesis [BR:
steq03009
]
ICJ04_07270
Enzymes [BR:
steq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ICJ04_07270
Messenger RNA biogenesis [BR:
steq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ICJ04_07270
Ribosome biogenesis [BR:
steq03009
]
Prokaryotic type
rRNA processing factors
ICJ04_07270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
SE
Motif
Other DBs
NCBI-ProteinID:
QNR98675
UniProt:
A0A7H1AQK3
LinkDB
All DBs
Position
complement(1682912..1686400)
Genome browser
AA seq
1162 aa
AA seq
DB search
MKRMLINATQAEELRVAIVDGQSLYDIDIEQPAKEQKKSNIYKGRIFRIEPSLEAAFVEY
GGGRHGFLPLKEISRDYFQAGVDHNKAGIKELLREGQEIVVQIDKDERGNKGAALTTFIS
LAGRYMVLMPNSPSAGGVSRRIEGEDRAALKDALDKLNIPDEMGVIIRTAGVGRDAEELQ
WDLDYLLNVWRAIAEAALSKPAPFLIYQESRLIVRALRDYLRADIGEILVDTEEMYEHAR
EFMQQVMPQTLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAI
DVNSSRATKGSDIEDTAFQTNLEAADEAARQLRLRDLGGLVVIDFIDMSSNKHQREVENR
LAQALKYDRARVQVGRISRFGLLEMSRQRLRPSLGESSQLVCPQCDGHGRMRSVESLSLS
IIRVAEEHAMKENTGQVLVQAPVEIANYLLNEKRSALREIEARHEAPIVIVADEQLHTPH
YTVTRLRENELGEESGKPSYQRGTPRKLPVHALTKGQLNIPPPAVTQVQHNSPAPIRDEA
APQPAPAPVAAPVAVAPAATGGVVGWFKRIFGGEPAAAPAPAPAARSNGNDSGRKDRSGK
DRNGKDRKDRRDEGRNGAAAGNAAAPGQGRNKDRGERGERAERGERGERRQGNAQGGNAQ
VAAQPVAGNGNGNGQQQPKQRQEQGKPRGERSEQAAGQAPAQGQQQPKVKQPRQPRQQDG
ERANGEKPQRDAAEQIDTAAIAATVATATAGVAAASTAADPSRQDVAATPVMPAAQDIAA
VSHAVADNAADTDETNAVTQADGELPPAGDEGAGEGGSRRRRGRRGGRRRRRGNAEGTAT
DSLGQDDADEDDNEDGDVAQGAEAQDGDSAEPRAPRSSRPQPEFDFDDEGDAPAPAEREK
RAAAVMTTAAIVPVAASPAASSAPVAFVAPAAPKVEAPKEVAPKAELPKVETPIVAAAPM
APPVAAVEAPKVETPVEAPKVEAPKVEAPKVEAPKVEAPKVEAPKVEASKVDAPVAAATP
ATATDTAPTWQPAPSAPAHVPAAEPEAVKPSPVASPTPVQTTMLDAVNAPAARAPVAAQE
AAAVAPPVASTPAVQPTVEQAADPLPAAVATPAVVEAVAAAEPAILAGGTDAAEQAAIVS
QTNAQAADADEEKAKPDNLPQG
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgaatgctgatcaacgctacgcaggctgaagagctgcgcgtcgccatcgtggat
ggccagtcgttgtatgacatcgacatcgagcagccggccaaggaacagaagaagtccaac
atctacaagggccggatcttccgcatcgagccctcgctggaagcggctttcgttgaatac
ggcggtggccgtcatggcttcctgccgctgaaggaaatctcccgcgattacttccaggcc
ggtgtggaccacaacaaggccggcatcaaggagctcctgcgcgaaggccaggaaatcgtg
gtgcagatcgacaaggatgagcgcggcaacaagggtgccgccctgaccacgttcatctcg
ctggccggccgctacatggtgctgatgccgaattcgccgagcgccggtggcgtgtcgcgt
cgcatcgaaggtgaagaccgcgccgccctgaaggacgcgctggacaagctgaacattccc
gacgaaatgggcgtgatcatccgtaccgccggcgtcggccgtgatgccgaagagctgcag
tgggatctggattacctgctgaacgtgtggcgcgccattgccgaagccgcactgagcaag
ccggcccccttcctgatctaccaggaatcgcgcctgatcgtacgtgccctgcgcgattac
ctgcgtgcggacatcggcgagatcctggtcgataccgaagaaatgtacgagcacgcccgc
gagttcatgcagcaggtgatgccgcagaccctgcgcaagctcaagcattacaccgacgac
atcccgctgttcaaccgcttccagatcgaatcgcagatcgagggcgcctacgagcgcaac
gtgcgtctgccgtcgggcggatcgatcgtggtcgaccagaccgaagcgctgaccgccatc
gacgtcaactcctcgcgcgccaccaagggcagcgatatcgaggacaccgcgttccagacc
aatctggaagcggctgacgaagcggcccgccagttgcgcctgcgcgacctgggcggtctg
gtcgtgatcgacttcatcgacatgtcgtccaacaagcaccagcgcgaggtcgagaaccgc
ctggcgcaggccctgaagtacgaccgtgcccgcgtccaggtcggccgcatctcgcgcttc
ggcctgctggaaatgagccgccagcgcctgcgtccgagcctgggcgaatccagccagctg
gtctgcccccagtgcgacggccatggccgcatgcgcagcgtcgagtcgctgtcgctgtcg
atcatccgcgtcgccgaagagcacgcgatgaaggagaacaccggacaggtgctggtacag
gcgccggtggaaatcgccaactacctgctcaacgaaaagcgcagcgcattgcgtgagatc
gaggcgcgtcacgaagccccgatcgtcatcgtggccgacgagcagctgcacacgccgcac
tacaccgtcacccgcctgcgtgagaacgagctgggtgaagaaagcggcaagccgagctac
cagcgcggcaccccgcgcaagctgccggtgcatgccctgaccaagggccagctgaacatc
ccgccgccggccgtgacccaggtgcagcacaactcgcccgccccgatccgcgacgaagcc
gcaccgcagccggcccccgcgcccgtcgcggctccggttgctgtcgcaccggccgctacc
ggcggtgtggtcggctggttcaagcgcatcttcggtggtgaaccggccgccgcgccggca
ccggcaccggccgcgcgttcgaacggcaacgacagtggccgcaaggaccgcagcggcaag
gatcgcaacggcaaggaccgcaaggaccgccgtgatgaaggtcgcaacggcgcggcagcc
ggcaacgctgctgcaccgggccagggtcgcaacaaggaccgtggcgagcgcggtgaacgt
gccgaacgcggtgaacgcggtgaacgccgccagggcaacgcgcagggtggcaatgcgcag
gtcgccgcccagccggttgccggaaacggtaacggcaatggccagcagcagcccaagcag
cgccaggaacagggcaagccgcgtggcgaacgcagcgagcaggccgcaggccaggcgccc
gcacagggccagcagcagccgaaggtgaagcagccgcgccagccgcgtcagcaggatggc
gagcgtgccaatggcgagaagccgcagcgtgatgcggccgagcagatcgacacggccgcc
atcgccgccaccgttgcgaccgcgacggcaggcgttgctgccgcatcgactgccgccgac
ccgtccaggcaggacgtggcggcaacgccggtcatgccggccgcacaggacattgctgcg
gtttcccatgctgttgccgacaacgcagcggacacggacgaaaccaacgcggtcacccag
gccgacggcgaactgccgcccgccggtgatgaaggtgcaggcgaaggcggctcgcgtcgt
cgtcgtggtcgtcgtggtggtcgccgccgtcgtcgtggcaatgccgaaggcaccgccacc
gattcgctcggccaggatgatgcggacgaggatgacaacgaggacggtgacgtcgcccag
ggcgctgaggcgcaggacggcgattcggccgaaccgcgtgcacccaggtcgtcgcgtccg
cagccggagttcgacttcgatgacgaaggcgatgcgcctgcgccggccgagcgcgagaag
cgtgcggctgcggtgatgaccacggcggcgatcgtgccggtcgcggccagcccggcagcc
agcagcgcaccggtcgccttcgtggctccggccgcgccgaaggtcgaggcgccgaaggaa
gtagcaccgaaggctgaactgcccaaggtcgagacgccgatcgttgccgcagctccgatg
gccccgccggtcgcggccgtcgaggcaccgaaggtcgaaacgccggtcgaggctccgaag
gtggaggctccgaaggttgaggctccgaaggttgaggctccgaaggttgaggctccgaag
gtggaggctccgaaggttgaggccagcaaggttgacgccccggtggctgctgcgacgccg
gcaactgctaccgacaccgccccgacctggcagccggcaccgtcggctcccgcccacgtg
cctgccgccgaaccggaagccgtcaagccttccccggtggcatcgcctaccccggtgcag
accaccatgctcgacgcggtgaacgcacctgccgcccgtgcgccggtggctgcacaggaa
gctgccgcggttgcacctccggtcgccagcacgccggccgttcagccgacggttgagcag
gctgcggatccgctgcctgcagcggtcgccaccccggccgtggtcgaagccgttgcggct
gccgaaccggcgatcctggccggcggcaccgacgccgccgagcaggccgcgatcgtcagc
cagaccaacgcacaggctgccgacgcggatgaagagaaagccaaaccggacaatctgccg
cagggctga
DBGET
integrated database retrieval system
