Stenotrophomonas sp. 169: ICJ04_12005
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Entry
ICJ04_12005 CDS
T08645
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
steq
Stenotrophomonas sp. 169
Pathway
steq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
steq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ICJ04_12005 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
steq03400
]
ICJ04_12005 (uvrB)
DNA repair and recombination proteins [BR:
steq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ICJ04_12005 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ICJ04_12005 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
UB2H
AIP3
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QNR96254
LinkDB
All DBs
Position
complement(2742771..2744807)
Genome browser
AA seq
678 aa
AA seq
DB search
MSDRFQLVSPYSPAGDQPNAIEKLTSNFEAGVAKQTLLGVTGSGKTYTIANVIDRIQKPT
LIMAPNKTLAAQLYGEFKAFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIE
QMRLAATKTLLSRPDALVVATVSAIYGLGAPEDYLSLRLILSKGERIDQRDLINHLTQLQ
YTRNEYELHRGTFRVRGEVIDVFPAESDSEALRIELFDGEVEKITLFDPLTGETLRNMMR
FTVYPKTHYATTRERVLGAVETIKVELKERLDQLYAENKLVEAQRLAQRTQFDIEMMAEV
GFCNGIENYSRHLTGKPAGSPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGDRSRKET
LVEFGFRLPSALDNRPLRFEEWEQRCPRAIYVSATPGPYEYREAGEDMAELVVRPTGLID
PIVEIRPVGTQVDDLMSEANERIKMGDRVLVTTLTKRMAENLTEYLSEHGIRVRYLHSDI
ETVERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIG
RAARNVRGKAILYADRMTRSMQAAIDETDRRRAKQVEYNEEHGIVPKSVARPIVDVLEGA
RSDPYDKGSRKGKGKAGKIGAVELAEEGADYATLSPSQVATRMKALEQRMYQHAKDLEFE
EAGRVRDLIKRLKEASLA
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaccgtttccaactcgtatcgccgtattcgccggctggcgaccagccgaacgcg
atcgagaagctgaccagcaacttcgaagccggcgtggccaagcagaccctgctgggcgtg
accggctcgggcaagacgtacaccatcgccaacgtcatcgaccgcatccagaagccgacg
ctgatcatggcgccgaacaagacgctggccgcgcagttgtacggtgagttcaaggcgttt
ttcccgcacaacgcggtggagtacttcgtcagctactacgactactaccagcccgaggcc
tacgtgccctcgtcggacaccttcatcgagaaggacagttcgatcaacgagcatatcgag
cagatgcgcctggccgcgaccaagaccctgctgtcgcgcccggatgcgctggtggtggcg
accgtgtcggccatctacggcctcggtgcgcccgaagattacctgtcgctgcgcttgatc
ctgtccaagggcgagcggatcgaccagcgcgacctgatcaaccacctgacgcagttgcag
tacacgcgcaacgagtacgagctgcatcgcggtacgttccgtgtgcgcggcgaggtgatc
gacgtgttcccggccgagtcggacagcgaagccctgcgcatcgagttgttcgatggtgaa
gtggaaaagatcacgctgttcgacccgctgaccggcgaaacactgcgcaacatgatgcgc
ttcaccgtgtacccgaagacccactacgccaccacgcgcgaacgggtgctgggcgctgtg
gagacgatcaaggtagagctgaaggaacggctggaccagttgtacgcagagaacaagctg
gtggaagcgcagcgactggcgcagcgcacccagttcgacatcgagatgatggccgaggtc
gggttctgcaacggcatcgaaaactactcgcgtcacctgaccggcaagcctgccggctcg
ccgccgccgaccctgtttgattacctgccgccggacgcgctgctggtgatcgacgaatcg
catgtgacgattccgcagatcggcgcgatgtacaagggcgaccgttcgcgcaaggagacg
ctggtcgaattcggtttccgcctgccctcggcgctggacaatcggccgctgcgtttcgag
gaatgggaacagcgttgcccgcgtgcgatctacgtgtcggccacgcccggtccgtatgaa
taccgcgaagcaggcgaggacatggcggagctggtggtgcgcccgaccggcctgatcgat
ccgatcgtggaaatccgccccgtcggcacgcaggtggacgacctgatgagcgaggccaac
gaacggatcaagatgggcgaccgcgtgctggtcaccaccctgaccaagcgcatggccgag
aacctcaccgagtacctgagcgagcacggcatccgcgtgcgttacctgcattcagacatc
gagaccgtggagcgggtggagatcatccgcgacctgcggctgggcaagttcgacgtgctg
gtgggcatcaacctgctgcgcgaaggtctggacatgccggaggtgtcgttggtggcgatc
ctggatgcggacaaggaaggtttcctgcgctcaaccggttcgctgatccagaccatcggc
cgcgcggcacgcaacgtgcgcggcaaagcgatcctgtatgcggaccggatgacgcggtcg
atgcaggcggcgatcgatgagaccgaccggcgccgggccaagcaggtcgagtacaacgaa
gagcacggcatcgtgcccaagtcagtcgcccgcccgattgtggacgtgctggagggcgcg
cgctctgacccctacgacaagggatcgcggaaggggaagggcaaggccggaaagatcggt
gcggtggagctggcggaggagggtgccgattacgccacgctgtcgccatcccaggtggca
acgcggatgaaggcactggaacagcggatgtaccagcacgccaaggacctggagttcgag
gaggccggccgcgtgcgcgacctcatcaagcgcctgaaagaagccagcctggcctga
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